mm9_v1_chr17_+_80706746_80706746	9.30271	HOX{A4,D4}.p2	NM_001145452|Arhgef33|381112|Rho guanine nucleotide exchange factor (GEF) 33
mm9_v1_chr12_+_30219982_30220081	6.38534	HOX{A4,D4}.p2	AK049624|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr11_+_56825307_56825536	5.53886	HOX{A4,D4}.p2	AK049958|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	BC056397|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	AB102773|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	AB102774|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	BC060702|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr8_-_87461251_87461273	5.20257	HOX{A4,D4}.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr7_-_20284370_20284493	5.06765	HOX{A4,D4}.p2	BC083351|Apoe|11816|apolipoprotein E	BC044785|Apoe|11816|apolipoprotein E	AK149568|Apoe|11816|apolipoprotein E	BC028816|Apoe|11816|apolipoprotein E	AK010261|Apoe|11816|apolipoprotein E	AK075843|Apoe|11816|apolipoprotein E	AK131624|Apoe|11816|apolipoprotein E	AK134921|Apoe|11816|apolipoprotein E	AK148747|Apoe|11816|apolipoprotein E	AK149111|Apoe|11816|apolipoprotein E	AK159105|Apoe|11816|apolipoprotein E	AK159517|Apoe|11816|apolipoprotein E	AK150834|Apoe|11816|apolipoprotein E	AK159424|Apoe|11816|apolipoprotein E
mm9_v1_chr7_+_152024499_152024558	4.6695	HOX{A4,D4}.p2	AK133901|Fgf3|14174|fibroblast growth factor 3	X52014|Fgf3|14174|fibroblast growth factor 3	NM_008007|Fgf3|14174|fibroblast growth factor 3	BC117059|Fgf3|14174|fibroblast growth factor 3	BC117061|Fgf3|14174|fibroblast growth factor 3
mm9_v1_chr4_+_97248556_97248685	4.63253	HOX{A4,D4}.p2	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr8_+_115093942_115094124	4.30463	HOX{A4,D4}.p2	BC034628|Cntnap4|170571|contactin associated protein-like 4	NM_130457|Cntnap4|170571|contactin associated protein-like 4	AK142816|Cntnap4|170571|contactin associated protein-like 4	AK081891|Cntnap4|170571|contactin associated protein-like 4	AK053611|Cntnap4|170571|contactin associated protein-like 4	AK042607|Cntnap4|170571|contactin associated protein-like 4	AK173255|Cntnap4|170571|contactin associated protein-like 4	AF333770|Cntnap4|170571|contactin associated protein-like 4
mm9_v1_chr10_-_63552994_63553028	4.28615	HOX{A4,D4}.p2	AK036366|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK163753|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035773|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035858|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035882|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	NM_178678|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK032485|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK036180|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3
mm9_v1_chrM_+_3913_4410	4.24675	HOX{A4,D4}.p2	
mm9_v1_chr11_-_30168153_30168187	4.04099	HOX{A4,D4}.p2	AK137356|Spnb2|20742|spectrin beta 2
mm9_v1_chrM_+_3320_3438	3.91131	HOX{A4,D4}.p2	
mm9_v1_chrM_+_15355_15407	3.87975	HOX{A4,D4}.p2	
mm9_v1_chr12_+_110783593_110783620	3.81108	HOX{A4,D4}.p2	AK018105|Meg3|17263|maternally expressed 3	AK140201|Meg3|17263|maternally expressed 3
mm9_v1_chr2_+_138104219_138104260	3.62694	HOX{A4,D4}.p2	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr2_-_6805937_6806041	3.61076	HOX{A4,D4}.p2	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr2_+_70312979_70313222	3.57159	HOX{A4,D4}.p2	AK036234|Sp5|64406|trans-acting transcription factor 5	NM_022435|Sp5|64406|trans-acting transcription factor 5	BC116691|Sp5|64406|trans-acting transcription factor 5	BC117505|Sp5|64406|trans-acting transcription factor 5	AF279479|Sp5|64406|trans-acting transcription factor 5
mm9_v1_chr16_+_96689322_96689354	3.53997	HOX{A4,D4}.p2	
mm9_v1_chr11_+_56825258_56825293	3.3621	HOX{A4,D4}.p2	X57497|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr2_+_61884596_61884650	3.32111	HOX{A4,D4}.p2	AK043017|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	NM_033552|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	AK220501|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	HM149278|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	BC039226|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	AB033759|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
mm9_v1_chrM_+_12383_12506	3.31932	HOX{A4,D4}.p2	
mm9_v1_chr6_+_77192615_77192722	3.23511	HOX{A4,D4}.p2	AK080836|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	NM_028880|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK014545|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK053345|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chrX_-_161765324_161765332	3.1996	HOX{A4,D4}.p2	AK139335|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr18_-_32109233_32109289	3.08295	HOX{A4,D4}.p2	BC070439|Gpr17|574402|G protein-coupled receptor 17	NM_001025381|Gpr17|574402|G protein-coupled receptor 17
mm9_v1_chr8_-_3625251_3625286	3.07853	HOX{A4,D4}.p2	M21532|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_008790|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr19_-_57271875_57272120	3.01633	HOX{A4,D4}.p2	AF404775|Ablim1|226251|actin-binding LIM protein 1	AK143907|Ablim1|226251|actin-binding LIM protein 1	NM_001103177|Ablim1|226251|actin-binding LIM protein 1	AK122196|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr7_+_86418127_86418181	2.96874	HOX{A4,D4}.p2	AK008690|Abhd2|54608|abhydrolase domain containing 2	AK053460|Abhd2|54608|abhydrolase domain containing 2	AK139526|Abhd2|54608|abhydrolase domain containing 2	NM_018811|Abhd2|54608|abhydrolase domain containing 2	AF546701|Abhd2|54608|abhydrolase domain containing 2	BC089477|Abhd2|54608|abhydrolase domain containing 2	AF201730|Abhd2|54608|abhydrolase domain containing 2	BC027098|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr13_+_58909168_58909217	2.91808	HOX{A4,D4}.p2	NM_001025074|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2	X17647|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr9_-_91255831_91255857	2.83641	HOX{A4,D4}.p2	AK141431|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr12_+_30213224_30213265	2.83375	HOX{A4,D4}.p2	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr10_+_101621491_101621538	2.83011	HOX{A4,D4}.p2	NM_001162368|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	AK015051|4930402I19Rik|73798|RIKEN cDNA 4930402I19 gene
mm9_v1_chr8_-_87461220_87461246	2.67143	HOX{A4,D4}.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr13_+_58909236_58909250	2.66192	HOX{A4,D4}.p2	AK028827|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr4_+_144482979_144483095	2.64779	HOX{A4,D4}.p2	AK032958|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	X95281|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	AK151419|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_011303|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	BC013540|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr14_+_61757271_61757327	2.60786	HOX{A4,D4}.p2	AK160797|Sacs|50720|sacsin	NM_172809|Sacs|50720|sacsin	AK046501|Sacs|50720|sacsin
mm9_v1_chr7_+_86418082_86418112	2.48387	HOX{A4,D4}.p2	AK153642|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr15_+_4325490_4325644	2.45301	HOX{A4,D4}.p2	AK038575|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	NM_177355|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137637|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137639|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	AK044972|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm9_v1_chrM_+_3844_3864	2.41857	HOX{A4,D4}.p2	
mm9_v1_chrM_+_11027_11268	2.38878	HOX{A4,D4}.p2	
mm9_v1_chrX_-_35605544_35605615	2.31322	HOX{A4,D4}.p2	BC062956|Fam70a|245386|family with sequence similarity 70, member A	AK077178|Fam70a|245386|family with sequence similarity 70, member A	AK078264|Fam70a|245386|family with sequence similarity 70, member A	AK041985|Fam70a|245386|family with sequence similarity 70, member A	AK045375|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chr18_-_31476721_31476786	2.30906	HOX{A4,D4}.p2	U71202|Rit2|19762|Ras-like without CAAX 2	AK162953|Rit2|19762|Ras-like without CAAX 2	AK040743|Rit2|19762|Ras-like without CAAX 2	AK041418|Rit2|19762|Ras-like without CAAX 2	BC018267|Rit2|19762|Ras-like without CAAX 2	NM_009065|Rit2|19762|Ras-like without CAAX 2	AK140726|Rit2|19762|Ras-like without CAAX 2
mm9_v1_chr4_+_101180580_101180604	2.24046	HOX{A4,D4}.p2	NM_001164584|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	NM_001164585|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK030374|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK122293|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr4_+_109015660_109015680	2.20556	HOX{A4,D4}.p2	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr10_-_24919916_24919967	2.17204	HOX{A4,D4}.p2	AK086696|Akap7|432442|A kinase (PRKA) anchor protein 7	AK085630|Akap7|432442|A kinase (PRKA) anchor protein 7	AK139238|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr12_+_110784600_110784655	2.14101	HOX{A4,D4}.p2	AK032021|Meg3|17263|maternally expressed 3	AK141629|Meg3|17263|maternally expressed 3
mm9_v1_chr5_+_137506122_137506164	2.11322	HOX{A4,D4}.p2	NM_001039385|Vgf|381677|VGF nerve growth factor inducible
mm9_v1_chr2_-_25325248_25325271	2.11186	HOX{A4,D4}.p2	AB006361|Ptgds|19215|prostaglandin D2 synthase (brain)	BC043015|Ptgds|19215|prostaglandin D2 synthase (brain)	AK131859|Ptgds|19215|prostaglandin D2 synthase (brain)	NM_008963|Ptgds|19215|prostaglandin D2 synthase (brain)
mm9_v1_chr3_-_80606500_80606592	2.08324	HOX{A4,D4}.p2	BC066193|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	X57498|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	BC048248|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr4_+_101180625_101180708	2.06012	HOX{A4,D4}.p2	AK147570|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK147637|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr1_-_160286359_160286472	2.0096	HOX{A4,D4}.p2	BC067038|Fam5b|240843|family with sequence similarity 5, member B	BC076572|Fam5b|240843|family with sequence similarity 5, member B	NM_207583|Fam5b|240843|family with sequence similarity 5, member B	AK032297|Fam5b|240843|family with sequence similarity 5, member B	AK047824|Fam5b|240843|family with sequence similarity 5, member B	AK122549|Fam5b|240843|family with sequence similarity 5, member B
mm9_v1_chr14_+_66963139_66963219	1.99915	HOX{A4,D4}.p2	BC014707|Stmn4|56471|stathmin-like 4	BC046752|Stmn4|56471|stathmin-like 4	NM_019675|Stmn4|56471|stathmin-like 4
mm9_v1_chr15_-_48623520_48623540	1.98748	HOX{A4,D4}.p2	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr1_+_111880313_111880391	1.8959	HOX{A4,D4}.p2	AK034096|Cdh7|241201|cadherin 7, type 2	NM_172853|Cdh7|241201|cadherin 7, type 2	AK137369|Cdh7|241201|cadherin 7, type 2
mm9_v1_chrM_+_2750_2751	1.87977	HOX{A4,D4}.p2	
mm9_v1_chr4_-_86876311_86876327	1.85517	HOX{A4,D4}.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr4_+_119486921_119486941	1.8538	HOX{A4,D4}.p2	AK035881|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr10_+_69487700_69487703	1.84519	HOX{A4,D4}.p2	AK033919|Ank3|11735|ankyrin 3, epithelial	AK036171|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr18_+_37467108_37467135	1.84405	HOX{A4,D4}.p2	AK036169|Pcdhb4|93875|protocadherin beta 4	AK143280|Pcdhb4|93875|protocadherin beta 4	AK160730|Pcdhb4|93875|protocadherin beta 4	NM_053129|Pcdhb4|93875|protocadherin beta 4	AK029277|Pcdhb4|93875|protocadherin beta 4	BC053098|Pcdhb4|93875|protocadherin beta 4
mm9_v1_chr18_+_37607310_37607496	1.83858	HOX{A4,D4}.p2	AK032156|Pcdhb14|93885|protocadherin beta 14	NM_053139|Pcdhb14|93885|protocadherin beta 14	AK008662|Pcdhb14|93885|protocadherin beta 14	BC059821|Pcdhb14|93885|protocadherin beta 14	AK083065|Pcdhb14|93885|protocadherin beta 14	AY013775|Pcdhb14|93885|protocadherin beta 14
mm9_v1_chr9_-_60535274_60535340	1.81318	HOX{A4,D4}.p2	AK051325|Lrrc49|102747|leucine rich repeat containing 49	NM_001146047|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr2_+_55288297_55288380	1.78771	HOX{A4,D4}.p2	BC068167|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3
mm9_v1_chrX_-_7709907_7709983	1.74474	HOX{A4,D4}.p2	BC080853|Wdr13|73447|WD repeat domain 13	BC057366|Wdr13|73447|WD repeat domain 13	NM_026137|Wdr13|73447|WD repeat domain 13
mm9_v1_chr19_-_5802596_5802674	1.73747	HOX{A4,D4}.p2	AK020134|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK019083|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK084336|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK088913|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	EF177380|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK009681|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK028133|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr10_-_101953046_101953066	1.7093	HOX{A4,D4}.p2	AF304160|Nts|67405|neurotensin	BC043024|Nts|67405|neurotensin	NM_024435|Nts|67405|neurotensin	AK017202|Nts|67405|neurotensin	AK017212|Nts|67405|neurotensin
mm9_v1_chr15_-_56526052_56526100	1.6829	HOX{A4,D4}.p2	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr11_-_42134548_42134554	1.66338	HOX{A4,D4}.p2	AK135145|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	AK137331|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_001099641|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_008068|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr3_+_136598184_136598389	1.6593	HOX{A4,D4}.p2	AK218972|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK179617|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK145309|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr9_-_49607164_49607185	1.62268	HOX{A4,D4}.p2	NM_001081445|Ncam1|17967|neural cell adhesion molecule 1	NM_001113204|Ncam1|17967|neural cell adhesion molecule 1	NM_010875|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr2_+_90725895_90726123	1.60523	HOX{A4,D4}.p2	NM_026161|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	BC087832|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	AK002948|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	BC027315|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr17_-_43803963_43804162	1.60387	HOX{A4,D4}.p2	AK014394|Slc25a27|74011|solute carrier family 25, member 27	NM_028711|Slc25a27|74011|solute carrier family 25, member 27	BC138993|Slc25a27|74011|solute carrier family 25, member 27	BC138994|Slc25a27|74011|solute carrier family 25, member 27	AB106930|Slc25a27|74011|solute carrier family 25, member 27	AK021314|Slc25a27|74011|solute carrier family 25, member 27	AK043831|Slc25a27|74011|solute carrier family 25, member 27
mm9_v1_chr7_+_139158135_139158148	1.60272	HOX{A4,D4}.p2	AK036100|Gpr26|233919|G protein-coupled receptor 26	NM_173410|Gpr26|233919|G protein-coupled receptor 26
mm9_v1_chr4_-_86876328_86876443	1.57991	HOX{A4,D4}.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr2_-_60801248_60801283	1.56261	HOX{A4,D4}.p2	BC016501|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	AK147109|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	NM_020296|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr9_-_30957394_30957461	1.55796	HOX{A4,D4}.p2	
mm9_v1_chr5_+_33361479_33361562	1.52881	HOX{A4,D4}.p2	AK149224|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK083936|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	D87661|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	BC061497|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AF077002|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr1_-_42724504_42724516	1.51436	HOX{A4,D4}.p2	BC049671|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr3_-_80606598_80606626	1.50696	HOX{A4,D4}.p2	AK045738|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr4_+_138012860_138012969	1.50249	HOX{A4,D4}.p2	AK021100|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr16_-_42340613_42340763	1.50222	HOX{A4,D4}.p2	AK031908|Gap43|14432|growth associated protein 43	BC080758|Gap43|14432|growth associated protein 43	BC028288|Gap43|14432|growth associated protein 43	NM_008083|Gap43|14432|growth associated protein 43
mm9_v1_chrM_+_1550_2087	1.50205	HOX{A4,D4}.p2	
mm9_v1_chr5_-_121459496_121459582	1.49097	HOX{A4,D4}.p2	BC042585|Rph3a|19894|rabphilin 3A	NM_011286|Rph3a|19894|rabphilin 3A
mm9_v1_chr11_-_79317471_79317554	1.47147	HOX{A4,D4}.p2	BC024757|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr14_-_65035722_65035811	1.46067	HOX{A4,D4}.p2	AK018338|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chrX_-_131285919_131285957	1.45303	HOX{A4,D4}.p2	BC027264|Armcx6|278097|armadillo repeat containing, X-linked 6	AK148507|Armcx6|278097|armadillo repeat containing, X-linked 6	AK160766|Armcx6|278097|armadillo repeat containing, X-linked 6	NM_001007578|Armcx6|278097|armadillo repeat containing, X-linked 6
mm9_v1_chr2_+_65458814_65458867	1.44752	HOX{A4,D4}.p2	
mm9_v1_chr6_+_104443037_104443047	1.44602	HOX{A4,D4}.p2	BC076594|Cntn6|53870|contactin 6	NM_017383|Cntn6|53870|contactin 6
mm9_v1_chr11_+_29607599_29607721	1.44574	HOX{A4,D4}.p2	AB073672|Rtn4|68585|reticulon 4
mm9_v1_chr8_-_3624988_3625048	1.42648	HOX{A4,D4}.p2	AK003002|Pcp2|18545|Purkinje cell protein 2 (L7)	AK160398|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129804|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr11_+_56825192_56825257	1.3842	HOX{A4,D4}.p2	NM_001113325|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	NM_008165|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr6_+_88674697_88674748	1.36543	HOX{A4,D4}.p2	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr2_-_66248146_66248185	1.33914	HOX{A4,D4}.p2	
mm9_v1_chr10_-_88067758_88067896	1.33626	HOX{A4,D4}.p2	BC062158|Mybpc1|109272|myosin binding protein C, slow-type	AK132188|Mybpc1|109272|myosin binding protein C, slow-type	NM_175418|Mybpc1|109272|myosin binding protein C, slow-type
mm9_v1_chrM_+_14143_14189	1.32297	HOX{A4,D4}.p2	
mm9_v1_chr9_+_37175190_37175276	1.31436	HOX{A4,D4}.p2	AK013637|Hepacam|72927|hepatocyte cell adhesion molecule	NM_175189|Hepacam|72927|hepatocyte cell adhesion molecule	BC139057|Hepacam|72927|hepatocyte cell adhesion molecule	BC139058|Hepacam|72927|hepatocyte cell adhesion molecule	AK081154|Hepacam|72927|hepatocyte cell adhesion molecule	BC082537|Hepacam|72927|hepatocyte cell adhesion molecule
mm9_v1_chr11_-_30168142_30168145	1.30339	HOX{A4,D4}.p2	BC092544|Spnb2|20742|spectrin beta 2
mm9_v1_chrM_+_409_428	1.2998	HOX{A4,D4}.p2	
mm9_v1_chr16_-_37384915_37385011	1.29009	HOX{A4,D4}.p2	BC137883|Stxbp5l|207227|syntaxin binding protein 5-like	BC145007|Stxbp5l|207227|syntaxin binding protein 5-like	BC145008|Stxbp5l|207227|syntaxin binding protein 5-like	BC145009|Stxbp5l|207227|syntaxin binding protein 5-like	AK035159|Stxbp5l|207227|syntaxin binding protein 5-like	AK082159|Stxbp5l|207227|syntaxin binding protein 5-like	AK137325|Stxbp5l|207227|syntaxin binding protein 5-like	AK161955|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr5_+_107926763_107926815	1.28588	HOX{A4,D4}.p2	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr13_+_46597271_46597443	1.28167	HOX{A4,D4}.p2	AK035556|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	NM_026056|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr18_-_31476626_31476690	1.26886	HOX{A4,D4}.p2	AK140133|Rit2|19762|Ras-like without CAAX 2	AK046425|Rit2|19762|Ras-like without CAAX 2	AK139394|Rit2|19762|Ras-like without CAAX 2	AF084463|Rit2|19762|Ras-like without CAAX 2	AK162862|Rit2|19762|Ras-like without CAAX 2
mm9_v1_chr12_+_30219769_30219800	1.26582	HOX{A4,D4}.p2	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr8_+_48072271_48072307	1.26554	HOX{A4,D4}.p2	AK046881|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK046797|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	NM_177304|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079642|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079352|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK038460|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	BC096376|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm9_v1_chr18_-_35374663_35374683	1.2579	HOX{A4,D4}.p2	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr12_+_109843975_109843976	1.23517	HOX{A4,D4}.p2	AK134563|Evl|14026|Ena-vasodilator stimulated phosphoprotein	NM_001163395|Evl|14026|Ena-vasodilator stimulated phosphoprotein
mm9_v1_chr2_+_163843294_163843512	1.23105	HOX{A4,D4}.p2	AK206846|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK207996|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK212148|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK214843|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK215126|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK219468|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr2_+_37372112_37372145	1.23048	HOX{A4,D4}.p2	AK141999|Gpr21|338346|G protein-coupled receptor 21	AK048682|Gpr21|338346|G protein-coupled receptor 21	AK139361|Gpr21|338346|G protein-coupled receptor 21	NM_177383|Gpr21|338346|G protein-coupled receptor 21
mm9_v1_chrX_-_20527674_20527737	1.22545	HOX{A4,D4}.p2	BC054474|Elk1|13712|ELK1, member of ETS oncogene family	AK132354|Elk1|13712|ELK1, member of ETS oncogene family	NM_007922|Elk1|13712|ELK1, member of ETS oncogene family	AK082260|Elk1|13712|ELK1, member of ETS oncogene family
mm9_v1_chr4_+_119487105_119487332	1.19431	HOX{A4,D4}.p2	AY454348|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC058336|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	NM_010657|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454345|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr19_+_12040311_12040373	1.19336	HOX{A4,D4}.p2	NM_001033174|Osbp|76303|oxysterol binding protein
mm9_v1_chr18_+_37649118_37649272	1.19064	HOX{A4,D4}.p2	AK140341|Pcdhb18|93889|protocadherin beta 18	NM_053143|Pcdhb18|93889|protocadherin beta 18	BC099958|Pcdhb18|93889|protocadherin beta 18	AY013779|Pcdhb18|93889|protocadherin beta 18
mm9_v1_chr6_+_134932018_134932018	1.18339	HOX{A4,D4}.p2	NM_001109914|Apold1|381823|apolipoprotein L domain containing 1
mm9_v1_chr9_-_91260619_91260636	1.1804	HOX{A4,D4}.p2	NM_009573|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr19_-_5085487_5085548	1.16533	HOX{A4,D4}.p2	AK144531|Tmem151a|381199|transmembrane protein 151A	AK155690|Tmem151a|381199|transmembrane protein 151A	AK163651|Tmem151a|381199|transmembrane protein 151A	AK139456|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr8_+_116729508_116729539	1.14331	HOX{A4,D4}.p2	BC056927|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)	AK122527|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)	NM_173016|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)
mm9_v1_chr18_+_37834003_37834149	1.13117	HOX{A4,D4}.p2	AY013797|Pcdhga3|93711|protocadherin gamma subfamily A, 3
mm9_v1_chr17_+_24607348_24607427	1.12981	HOX{A4,D4}.p2	BC083113|Pgp|67078|phosphoglycolate phosphatase	BC040100|Pgp|67078|phosphoglycolate phosphatase	NM_025954|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr18_-_31606908_31607087	1.12319	HOX{A4,D4}.p2	BC052738|Syt4|20983|synaptotagmin IV	BC058208|Syt4|20983|synaptotagmin IV	AK050515|Syt4|20983|synaptotagmin IV	AK220264|Syt4|20983|synaptotagmin IV	AK148681|Syt4|20983|synaptotagmin IV	AK043985|Syt4|20983|synaptotagmin IV	AK083960|Syt4|20983|synaptotagmin IV	AK032106|Syt4|20983|synaptotagmin IV	NM_009308|Syt4|20983|synaptotagmin IV
mm9_v1_chr9_-_121404750_121404785	1.12174	HOX{A4,D4}.p2	BC028487|Cck|12424|cholecystokinin	AK002677|Cck|12424|cholecystokinin
mm9_v1_chr8_+_119984482_119984512	1.08345	HOX{A4,D4}.p2	AK020023|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr16_+_49911557_49911575	1.07862	HOX{A4,D4}.p2	AK164165|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	AK021021|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr3_-_80606641_80606686	1.07763	HOX{A4,D4}.p2	AK044574|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK134572|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK086614|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK043490|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK141525|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr11_-_42134509_42134538	1.05727	HOX{A4,D4}.p2	X51986|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr19_+_27291507_27291624	1.054	HOX{A4,D4}.p2	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chrX_-_161764912_161765057	1.0536	HOX{A4,D4}.p2	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chrX_+_166123130_166123181	1.05048	HOX{A4,D4}.p2	AK160120|Mid1|17318|midline 1	NM_010797|Mid1|17318|midline 1	Y14848|Mid1|17318|midline 1
mm9_v1_chrX_+_35954355_35954475	1.04968	HOX{A4,D4}.p2	AK138385|Mcts1|68995|malignant T cell amplified sequence 1	BC037103|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chr1_+_180459245_180459259	1.04549	HOX{A4,D4}.p2	AB355846|Kif26b|269152|kinesin family member 26B	AK052046|Kif26b|269152|kinesin family member 26B	NM_001161665|Kif26b|269152|kinesin family member 26B
mm9_v1_chr15_-_37389073_37389150	1.03966	HOX{A4,D4}.p2	BC026979|Ncald|52589|neurocalcin delta	AK167313|Ncald|52589|neurocalcin delta	AK034031|Ncald|52589|neurocalcin delta	NM_001170867|Ncald|52589|neurocalcin delta	NM_001170868|Ncald|52589|neurocalcin delta
mm9_v1_chr14_-_37911383_37911496	1.02221	HOX{A4,D4}.p2	AF426393|Cdhr1|170677|cadherin-related family member 1	BC042454|Cdhr1|170677|cadherin-related family member 1	AK143151|Cdhr1|170677|cadherin-related family member 1	BC058270|Cdhr1|170677|cadherin-related family member 1	NM_130878|Cdhr1|170677|cadherin-related family member 1
mm9_v1_chr9_-_100386803_100386891	1.00545	HOX{A4,D4}.p2	BC107263|Il20rb|213208|interleukin 20 receptor beta	BC107264|Il20rb|213208|interleukin 20 receptor beta	BC148190|Il20rb|213208|interleukin 20 receptor beta	NM_001033543|Il20rb|213208|interleukin 20 receptor beta
mm9_v1_chr6_+_97160749_97160814	1.0053	HOX{A4,D4}.p2	AF421860|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK077826|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	NM_022992|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK076519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK088205|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF133912|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	BC003897|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK008519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK005259|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF265214|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr2_-_148558110_148558202	1.00339	HOX{A4,D4}.p2	AK078224|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC038362|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	AK083184|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	NM_019632|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC049874|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm9_v1_chr2_+_174153230_174153414	0.975717	HOX{A4,D4}.p2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr12_+_110783786_110783839	0.936208	HOX{A4,D4}.p2	BC048191|Meg3|17263|maternally expressed 3
mm9_v1_chr19_-_55177562_55177604	0.922501	HOX{A4,D4}.p2	AK047295|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	AK173202|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr8_-_89996089_89996284	0.922125	HOX{A4,D4}.p2	AK161846|Cbln1|12404|cerebellin 1 precursor protein	BC051956|Cbln1|12404|cerebellin 1 precursor protein	BC055730|Cbln1|12404|cerebellin 1 precursor protein	BC132120|Cbln1|12404|cerebellin 1 precursor protein	BC132122|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr15_-_8660442_8660451	0.892308	HOX{A4,D4}.p2	AK084968|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr19_+_8915018_8915039	0.887549	HOX{A4,D4}.p2	AK004634|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK151606|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK155753|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK170183|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr3_+_136598485_136598597	0.885397	HOX{A4,D4}.p2	AK053582|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr6_-_84543739_84543901	0.885203	HOX{A4,D4}.p2	AY134662|Cyp26b1|232174|cytochrome P450, family 26, subfamily b, polypeptide 1	NM_175475|Cyp26b1|232174|cytochrome P450, family 26, subfamily b, polypeptide 1	BC059246|Cyp26b1|232174|cytochrome P450, family 26, subfamily b, polypeptide 1	NM_001177713|Cyp26b1|232174|cytochrome P450, family 26, subfamily b, polypeptide 1
mm9_v1_chr15_-_8660729_8660806	0.881069	HOX{A4,D4}.p2	BC058711|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	NM_148938|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr15_-_8660462_8660476	0.869454	HOX{A4,D4}.p2	AK031831|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK040798|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK049090|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK082736|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	U75377|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr18_-_61173753_61173875	0.855339	HOX{A4,D4}.p2	BC050103|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	BC057070|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	NM_201353|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	AK141581|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
mm9_v1_chr18_-_43219062_43219124	0.85034	HOX{A4,D4}.p2	BC026686|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK148956|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK013600|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	NM_028392|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr18_+_37849488_37849707	0.845721	HOX{A4,D4}.p2	BC054557|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	NM_033575|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	AY013805|Pcdhgb2|93700|protocadherin gamma subfamily B, 2
mm9_v1_chr15_-_58614642_58614788	0.827935	HOX{A4,D4}.p2	AK011623|Tmem65|74868|transmembrane protein 65
mm9_v1_chr18_+_37460452_37460636	0.82558	HOX{A4,D4}.p2	AK030570|Pcdhb3|93874|protocadherin beta 3	NM_053128|Pcdhb3|93874|protocadherin beta 3	BC079557|Pcdhb3|93874|protocadherin beta 3	AF326296|Pcdhb3|93874|protocadherin beta 3	AY013785|Pcdhb3|93874|protocadherin beta 3
mm9_v1_chrM_+_67_138	0.818321	HOX{A4,D4}.p2	
mm9_v1_chr4_-_132066370_132066424	0.816245	HOX{A4,D4}.p2	BC005672|Sesn2|230784|sestrin 2	NM_144907|Sesn2|230784|sestrin 2	AK170228|Sesn2|230784|sestrin 2	AK170547|Sesn2|230784|sestrin 2	AK143788|Sesn2|230784|sestrin 2
mm9_v1_chr17_+_25325290_25325342	0.81586	HOX{A4,D4}.p2	AK054549|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr10_-_126558035_126558203	0.81056	HOX{A4,D4}.p2	BC006844|Os9|216440|amplified in osteosarcoma	BC031768|Os9|216440|amplified in osteosarcoma	AK028047|Os9|216440|amplified in osteosarcoma
mm9_v1_chr17_-_35975148_35975258	0.799799	HOX{A4,D4}.p2	BC003825|Tubb5|22154|tubulin, beta 5	AK076196|Tubb5|22154|tubulin, beta 5	AK148978|Tubb5|22154|tubulin, beta 5	AK167808|Tubb5|22154|tubulin, beta 5	AK168271|Tubb5|22154|tubulin, beta 5	AK169123|Tubb5|22154|tubulin, beta 5	AK011263|Tubb5|22154|tubulin, beta 5	AK165249|Tubb5|22154|tubulin, beta 5	AK169210|Tubb5|22154|tubulin, beta 5	AK010960|Tubb5|22154|tubulin, beta 5	AK011765|Tubb5|22154|tubulin, beta 5	AK012350|Tubb5|22154|tubulin, beta 5	AK017806|Tubb5|22154|tubulin, beta 5	AK051164|Tubb5|22154|tubulin, beta 5	AK051393|Tubb5|22154|tubulin, beta 5	AK083327|Tubb5|22154|tubulin, beta 5	AK146567|Tubb5|22154|tubulin, beta 5	AK151215|Tubb5|22154|tubulin, beta 5	AK151670|Tubb5|22154|tubulin, beta 5	AK160225|Tubb5|22154|tubulin, beta 5	AK161575|Tubb5|22154|tubulin, beta 5	AK167691|Tubb5|22154|tubulin, beta 5	AK167779|Tubb5|22154|tubulin, beta 5	AK167926|Tubb5|22154|tubulin, beta 5	AK169295|Tubb5|22154|tubulin, beta 5	AK169606|Tubb5|22154|tubulin, beta 5	NM_011655|Tubb5|22154|tubulin, beta 5
mm9_v1_chr1_+_81073778_81073898	0.798042	HOX{A4,D4}.p2	AK034747|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene	BC082310|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene	NM_172849|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene	AK137094|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene
mm9_v1_chr11_+_31900378_31900504	0.788964	HOX{A4,D4}.p2	AK088499|Nsg2|18197|neuron specific gene family member 2	NM_008741|Nsg2|18197|neuron specific gene family member 2	U17259|Nsg2|18197|neuron specific gene family member 2	AK049679|Nsg2|18197|neuron specific gene family member 2	AK075612|Nsg2|18197|neuron specific gene family member 2	AK160712|Nsg2|18197|neuron specific gene family member 2	BC018224|Nsg2|18197|neuron specific gene family member 2	AK041338|Nsg2|18197|neuron specific gene family member 2
mm9_v1_chr3_-_80606704_80606756	0.781707	HOX{A4,D4}.p2	AK163941|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK046861|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001039195|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001083806|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_013540|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK014389|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr9_+_86910371_86910467	0.775526	HOX{A4,D4}.p2	AB212223|Ripply2|382089|ripply2 homolog (zebrafish)	NM_001037907|Ripply2|382089|ripply2 homolog (zebrafish)	AK081203|Ripply2|382089|ripply2 homolog (zebrafish)
mm9_v1_chr18_+_37560490_37560542	0.773389	HOX{A4,D4}.p2	AK032626|Pcdhb9|93880|protocadherin beta 9	NM_053134|Pcdhb9|93880|protocadherin beta 9	BC055319|Pcdhb9|93880|protocadherin beta 9	BC062640|Pcdhb9|93880|protocadherin beta 9
mm9_v1_chr1_-_67085404_67085478	0.762978	HOX{A4,D4}.p2	Y16518|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	BC058560|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190984|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	Y11550|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AK146120|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AJ294535|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190985|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_021295|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1
mm9_v1_chr19_+_27291897_27291921	0.758939	HOX{A4,D4}.p2	U06670|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr1_-_157264398_157264577	0.755267	HOX{A4,D4}.p2	AK147403|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	BC153872|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF114753|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	BC075721|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AK141660|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	NM_011273|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1
mm9_v1_chr18_-_78402529_78402633	0.746131	HOX{A4,D4}.p2	AY221737|Slc14a2|27411|solute carrier family 14 (urea transporter), member 2
mm9_v1_chr8_+_96335202_96335227	0.745202	HOX{A4,D4}.p2	M36778|Gnao1|14681|guanine nucleotide binding protein, alpha O	M36777|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr2_-_73498303_73498483	0.738106	HOX{A4,D4}.p2	AB264771|Chn1|108699|chimerin (chimaerin) 1	BC025023|Chn1|108699|chimerin (chimaerin) 1	AK049943|Chn1|108699|chimerin (chimaerin) 1	AK147686|Chn1|108699|chimerin (chimaerin) 1	BC010825|Chn1|108699|chimerin (chimaerin) 1	BC024796|Chn1|108699|chimerin (chimaerin) 1	AK032630|Chn1|108699|chimerin (chimaerin) 1	AK075606|Chn1|108699|chimerin (chimaerin) 1	NM_001166604|Chn1|108699|chimerin (chimaerin) 1	NM_175752|Chn1|108699|chimerin (chimaerin) 1
mm9_v1_chr11_-_33103458_33103587	0.735943	HOX{A4,D4}.p2	AJ223801|Tlx3|27140|T-cell leukemia, homeobox 3	BC141308|Tlx3|27140|T-cell leukemia, homeobox 3	BC145631|Tlx3|27140|T-cell leukemia, homeobox 3	AK141870|Tlx3|27140|T-cell leukemia, homeobox 3	NM_019916|Tlx3|27140|T-cell leukemia, homeobox 3
mm9_v1_chr12_+_110800212_110800261	0.734031	HOX{A4,D4}.p2	AK018142|Meg3|17263|maternally expressed 3
mm9_v1_chr18_-_33623287_33623340	0.732387	HOX{A4,D4}.p2	NM_053078|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr6_-_13788453_13788525	0.729627	HOX{A4,D4}.p2	AK043090|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr10_+_59763520_59763616	0.715596	HOX{A4,D4}.p2	AK191344|Psap|19156|prosaposin
mm9_v1_chr8_+_46593141_46593271	0.707589	HOX{A4,D4}.p2	AK171632|Sorbs2|234214|sorbin and SH3 domain containing 2	NM_172752|Sorbs2|234214|sorbin and SH3 domain containing 2	AK139388|Sorbs2|234214|sorbin and SH3 domain containing 2	BC151038|Sorbs2|234214|sorbin and SH3 domain containing 2	BC172140|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr11_+_75439670_75439831	0.70514	HOX{A4,D4}.p2	AK218843|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK214842|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr2_-_63022140_63022343	0.702966	HOX{A4,D4}.p2	AJ291608|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK052366|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK043768|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK034003|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_133207|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm9_v1_chrX_-_148776674_148776969	0.700181	HOX{A4,D4}.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr18_-_15222079_15222098	0.688678	HOX{A4,D4}.p2	NM_001142731|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr9_-_54509453_54509528	0.683122	HOX{A4,D4}.p2	AK129179|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	BC057322|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	AK054103|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr3_+_89324085_89324085	0.679029	HOX{A4,D4}.p2	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr17_+_24607576_24607746	0.67404	HOX{A4,D4}.p2	AK005906|Pgp|67078|phosphoglycolate phosphatase	AK013578|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr9_-_91260597_91260611	0.665025	HOX{A4,D4}.p2	BC063247|Zic1|22771|zinc finger protein of the cerebellum 1	AK159769|Zic1|22771|zinc finger protein of the cerebellum 1	AK139143|Zic1|22771|zinc finger protein of the cerebellum 1	BC060247|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chrX_+_133357268_133357438	0.654191	HOX{A4,D4}.p2	AK160872|Plp1|18823|proteolipid protein (myelin) 1	AK134554|Plp1|18823|proteolipid protein (myelin) 1	M15442|Plp1|18823|proteolipid protein (myelin) 1	AK077564|Plp1|18823|proteolipid protein (myelin) 1	BC027010|Plp1|18823|proteolipid protein (myelin) 1	NM_011123|Plp1|18823|proteolipid protein (myelin) 1	AK192772|Plp1|18823|proteolipid protein (myelin) 1	AK203421|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr15_-_8584897_8584949	0.648568	HOX{A4,D4}.p2	U75376|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	U75378|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr4_+_103291963_103292084	0.645003	HOX{A4,D4}.p2	
mm9_v1_chr18_+_37595274_37595294	0.639692	HOX{A4,D4}.p2	NM_053137|Pcdhb12|93883|protocadherin beta 12
mm9_v1_chr6_+_97160736_97160744	0.636826	HOX{A4,D4}.p2	D87211|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr3_+_98084352_98084426	0.632514	HOX{A4,D4}.p2	NM_008256|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004865|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004902|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK098104|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC014714|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC024744|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm9_v1_chr12_+_53800302_53800317	0.628783	HOX{A4,D4}.p2	DQ233645|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr8_-_89996474_89996540	0.628359	HOX{A4,D4}.p2	AK158818|Cbln1|12404|cerebellin 1 precursor protein	NM_019626|Cbln1|12404|cerebellin 1 precursor protein	AK158885|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr9_-_67680136_67680136	0.623465	HOX{A4,D4}.p2	NM_001163143|C2cd4a|244911|C2 calcium-dependent domain containing 4A
mm9_v1_chr5_-_124637176_124637203	0.618721	HOX{A4,D4}.p2	AK129364|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	BC070452|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr12_+_39506844_39506916	0.616245	HOX{A4,D4}.p2	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr5_-_137548123_137548145	0.614239	HOX{A4,D4}.p2	BC054091|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	M33960|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	AK040662|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	NM_008871|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm9_v1_chr13_-_8870975_8870975	0.612989	HOX{A4,D4}.p2	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr2_+_136581861_136581917	0.612925	HOX{A4,D4}.p2	AF483516|Snap25|20614|synaptosomal-associated protein 25	AF483517|Snap25|20614|synaptosomal-associated protein 25
mm9_v1_chr18_+_52927362_52927362	0.612054	HOX{A4,D4}.p2	AK132346|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	NM_026408|Sncaip|67847|synuclein, alpha interacting protein (synphilin)
mm9_v1_chr8_-_70498472_70498472	0.602124	HOX{A4,D4}.p2	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr12_+_39510297_39510297	0.592807	HOX{A4,D4}.p2	AK032224|Etv1|14009|ets variant gene 1	NM_001163154|Etv1|14009|ets variant gene 1
mm9_v1_chr4_+_144482722_144482729	0.586527	HOX{A4,D4}.p2	BC008980|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_001172424|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr3_-_108236057_108236062	0.583298	HOX{A4,D4}.p2	AK181805|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK190309|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK217331|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK219731|Sars|20226|seryl-aminoacyl-tRNA synthetase
mm9_v1_chr4_+_144483110_144483188	0.571099	HOX{A4,D4}.p2	AK087137|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr11_+_87394543_87394570	0.568977	HOX{A4,D4}.p2	AK135143|Sept4|18952|septin 4	BC055101|Sept4|18952|septin 4	BC037673|Sept4|18952|septin 4
mm9_v1_chr12_+_77182878_77182935	0.565478	HOX{A4,D4}.p2	FJ848978|Syne2|319565|synaptic nuclear envelope 2
mm9_v1_chr9_-_40153864_40153891	0.56521	HOX{A4,D4}.p2	BC070451|Gramd1b|235283|GRAM domain containing 1B
mm9_v1_chr11_+_16157685_16157805	0.564966	HOX{A4,D4}.p2	AK033048|Vstm2a|211739|V-set and transmembrane domain containing 2A	NM_145967|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK032473|Vstm2a|211739|V-set and transmembrane domain containing 2A	BC027127|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK079096|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK137363|Vstm2a|211739|V-set and transmembrane domain containing 2A
mm9_v1_chr18_+_69753146_69753168	0.564314	HOX{A4,D4}.p2	AK151433|Tcf4|21413|transcription factor 4
mm9_v1_chr15_-_8660479_8660490	0.554009	HOX{A4,D4}.p2	AK045949|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK080879|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr16_+_49913305_49913369	0.552392	HOX{A4,D4}.p2	AK050387|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr15_+_61869529_61869619	0.55184	HOX{A4,D4}.p2	AK043790|Pvt1|19296|plasmacytoma variant translocation 1	AK030859|Pvt1|19296|plasmacytoma variant translocation 1	AK165927|Pvt1|19296|plasmacytoma variant translocation 1	AK043252|Pvt1|19296|plasmacytoma variant translocation 1	AK169445|Pvt1|19296|plasmacytoma variant translocation 1	AK165907|Pvt1|19296|plasmacytoma variant translocation 1	AK090048|Pvt1|19296|plasmacytoma variant translocation 1	AK169927|Pvt1|19296|plasmacytoma variant translocation 1
mm9_v1_chr3_+_67696141_67696177	0.551083	HOX{A4,D4}.p2	AK052136|Iqcj|208426|IQ motif containing J	NM_001113419|Iqcj-schip1|100505386|IQ motif containing J-schwannomin interacting protein 1 read-through transcript	NM_177585|Iqcj|208426|IQ motif containing J	BC107305|Iqcj|208426|IQ motif containing J	BC107306|Iqcj|208426|IQ motif containing J
mm9_v1_chr9_+_72859850_72859978	0.549518	HOX{A4,D4}.p2	BC006717|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr11_-_74981653_74981653	0.544309	HOX{A4,D4}.p2	NM_001098203|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chrM_+_13998_14016	0.54178	HOX{A4,D4}.p2	
mm9_v1_chr19_+_12040391_12040437	0.535372	HOX{A4,D4}.p2	BC107327|Osbp|76303|oxysterol binding protein	BC107328|Osbp|76303|oxysterol binding protein
mm9_v1_chr8_-_108467294_108467304	0.533188	HOX{A4,D4}.p2	AK149476|Lcat|16816|lecithin cholesterol acyltransferase	NM_008490|Lcat|16816|lecithin cholesterol acyltransferase
mm9_v1_chr1_-_156731538_156731628	0.532316	HOX{A4,D4}.p2	AK171983|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm9_v1_chr9_-_121404799_121404856	0.525485	HOX{A4,D4}.p2	NM_031161|Cck|12424|cholecystokinin
mm9_v1_chr9_+_113721698_113721717	0.52153	HOX{A4,D4}.p2	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chrM_-_16187_16189	0.520155	HOX{A4,D4}.p2	
mm9_v1_chr18_-_47528483_47528523	0.519685	HOX{A4,D4}.p2	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chr6_-_115201866_115201882	0.518509	HOX{A4,D4}.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr10_-_42722514_42722517	0.517578	HOX{A4,D4}.p2	AK019306|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chrX_-_159081510_159081550	0.517318	HOX{A4,D4}.p2	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr7_+_31092787_31092817	0.516208	HOX{A4,D4}.p2	BC058124|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr8_-_63433528_63433596	0.516153	HOX{A4,D4}.p2	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr1_-_173152634_173152646	0.507752	HOX{A4,D4}.p2	AK028388|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)	NM_001037170|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr11_+_87394609_87394632	0.503991	HOX{A4,D4}.p2	NM_011129|Sept4|18952|septin 4	X61452|Sept4|18952|septin 4
mm9_v1_chr16_+_57152994_57153228	0.497679	HOX{A4,D4}.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr5_+_89012600_89012641	0.495651	HOX{A4,D4}.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr5_+_89012596_89012599	0.495042	HOX{A4,D4}.p2	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr15_-_101632762_101632762	0.493063	HOX{A4,D4}.p2	BC067067|Krt73|223915|keratin 73	NM_212485|Krt73|223915|keratin 73
mm9_v1_chr3_+_125106995_125107008	0.491276	HOX{A4,D4}.p2	AF520870|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	AK140992|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	NM_022565|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm9_v1_chr6_-_115201846_115201865	0.490732	HOX{A4,D4}.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr2_-_84265422_84265424	0.48399	HOX{A4,D4}.p2	AK137210|Calcrl|54598|calcitonin receptor-like	NM_018782|Calcrl|54598|calcitonin receptor-like	AB015595|Calcrl|54598|calcitonin receptor-like
mm9_v1_chr5_+_138613248_138613363	0.481384	HOX{A4,D4}.p2	AK031638|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	NM_021392|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	AK165187|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	BC011174|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1
mm9_v1_chr12_-_42212538_42212554	0.475854	HOX{A4,D4}.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chrX_-_133277456_133277461	0.47315	HOX{A4,D4}.p2	NM_001168227|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr16_-_44114803_44114836	0.467929	HOX{A4,D4}.p2	AK181657|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr12_+_101447480_101447584	0.467859	HOX{A4,D4}.p2	BC021618|Calm1|12313|calmodulin 1
mm9_v1_chr18_-_35374531_35374610	0.464357	HOX{A4,D4}.p2	AK043173|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046818|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK049920|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK043784|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr18_+_37514924_37514931	0.462232	HOX{A4,D4}.p2	AY013790|Pcdhb8|93879|protocadherin beta 8	BC116268|Pcdhb8|93879|protocadherin beta 8	BC127160|Pcdhb8|93879|protocadherin beta 8	NM_053133|Pcdhb8|93879|protocadherin beta 8	BC116269|Pcdhb8|93879|protocadherin beta 8
mm9_v1_chr16_+_96689373_96689378	0.459422	HOX{A4,D4}.p2	X17320|Pcp4|18546|Purkinje cell protein 4
mm9_v1_chr19_-_5797068_5797184	0.457806	HOX{A4,D4}.p2	
mm9_v1_chr2_-_33310186_33310278	0.457651	HOX{A4,D4}.p2	
mm9_v1_chr8_+_109555200_109555247	0.455868	HOX{A4,D4}.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr5_-_147032490_147032561	0.455585	HOX{A4,D4}.p2	AK017576|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK029912|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK150269|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK152106|Rnf6|74132|ring finger protein (C3H2C3 type) 6
mm9_v1_chr2_+_124436328_124436346	0.454868	HOX{A4,D4}.p2	AK084922|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	AK031307|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr5_-_136386045_136386060	0.453432	HOX{A4,D4}.p2	AK179188|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK181145|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK191464|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chrX_-_20639111_20639168	0.451958	HOX{A4,D4}.p2	AK155039|Zfp182|319535|zinc finger protein 182	BC063066|Zfp182|319535|zinc finger protein 182	AK045698|Zfp182|319535|zinc finger protein 182	NM_001013387|Zfp182|319535|zinc finger protein 182	NM_001111076|Zfp182|319535|zinc finger protein 182	AK043973|Zfp182|319535|zinc finger protein 182
mm9_v1_chr8_-_34858230_34858241	0.449403	HOX{A4,D4}.p2	AK012595|2700090O03Rik|72632|RIKEN cDNA 2700090O03 gene
mm9_v1_chr17_-_90487479_90487653	0.443354	HOX{A4,D4}.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr6_+_77192839_77192971	0.441805	HOX{A4,D4}.p2	BC027803|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr2_-_23904343_23904369	0.439153	HOX{A4,D4}.p2	AB444950|Hnmt|140483|histamine N-methyltransferase	AB444951|Hnmt|140483|histamine N-methyltransferase	AK160131|Hnmt|140483|histamine N-methyltransferase
mm9_v1_chrX_+_21061748_21061785	0.436647	HOX{A4,D4}.p2	AK140941|Agtr2|11609|angiotensin II receptor, type 2	AK086334|Agtr2|11609|angiotensin II receptor, type 2	NM_007429|Agtr2|11609|angiotensin II receptor, type 2	L32840|Agtr2|11609|angiotensin II receptor, type 2	S67465|Agtr2|11609|angiotensin II receptor, type 2	U04828|Agtr2|11609|angiotensin II receptor, type 2
mm9_v1_chr1_-_72920776_72921027	0.432242	HOX{A4,D4}.p2	X81583|Igfbp5|16011|insulin-like growth factor binding protein 5	BC054812|Igfbp5|16011|insulin-like growth factor binding protein 5	BC026805|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr5_-_141096711_141096848	0.429985	HOX{A4,D4}.p2	AK019322|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr18_+_37979199_37979219	0.42958	HOX{A4,D4}.p2	AF464163|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	NM_033583|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464164|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr9_+_27598531_27598731	0.425064	HOX{A4,D4}.p2	AK158538|Opcml|330908|opioid binding protein/cell adhesion molecule-like
mm9_v1_chr1_-_137406954_137407027	0.42482	HOX{A4,D4}.p2	AK082667|Nav1|215690|neuron navigator 1	AK053255|Nav1|215690|neuron navigator 1
mm9_v1_chr11_+_87569075_87569079	0.424261	HOX{A4,D4}.p2	AK020764|A430104N18Rik|78591|RIKEN cDNA A430104N18 gene
mm9_v1_chr6_+_77193078_77193105	0.423399	HOX{A4,D4}.p2	AK053364|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chrX_-_148777014_148777028	0.423339	HOX{A4,D4}.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr18_-_23200150_23200199	0.422727	HOX{A4,D4}.p2	AK006244|Nol4|319211|nucleolar protein 4	AK031008|Nol4|319211|nucleolar protein 4	NM_199024|Nol4|319211|nucleolar protein 4	AK005959|Nol4|319211|nucleolar protein 4
mm9_v1_chr6_+_128349783_128350065	0.419158	HOX{A4,D4}.p2	AJ278170|Nrip2|60345|nuclear receptor interacting protein 2	NM_001162858|Nrip2|60345|nuclear receptor interacting protein 2	NM_021717|Nrip2|60345|nuclear receptor interacting protein 2	AK156526|Nrip2|60345|nuclear receptor interacting protein 2	AK134689|Nrip2|60345|nuclear receptor interacting protein 2	BC115523|Nrip2|60345|nuclear receptor interacting protein 2	BC094230|Nrip2|60345|nuclear receptor interacting protein 2
mm9_v1_chr11_-_21471767_21471820	0.415379	HOX{A4,D4}.p2	AK168545|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK002404|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	BC050940|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK008270|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK002395|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	M29462|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK164785|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK077724|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK046369|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)
mm9_v1_chrX_-_100381973_100382006	0.410402	HOX{A4,D4}.p2	X92352|Nap1l2|17954|nucleosome assembly protein 1-like 2	NM_008671|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr5_-_44152043_44152071	0.409967	HOX{A4,D4}.p2	AK210775|Fbxl5|242960|F-box and leucine-rich repeat protein 5
mm9_v1_chr3_-_126928844_126928867	0.407859	HOX{A4,D4}.p2	AK044093|Ank2|109676|ankyrin 2, brain
mm9_v1_chr15_-_8660393_8660418	0.402616	HOX{A4,D4}.p2	BC028638|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	BC066154|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK045716|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr9_-_21731973_21732007	0.400907	HOX{A4,D4}.p2	
mm9_v1_chrX_+_133371611_133371673	0.396923	HOX{A4,D4}.p2	AK199492|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr11_-_101646571_101646623	0.395925	HOX{A4,D4}.p2	AK166136|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144590|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144538|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	NM_008815|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr3_+_81736518_81736645	0.395831	HOX{A4,D4}.p2	AK143683|Ctso|229445|cathepsin O	AK034490|Ctso|229445|cathepsin O	NM_177662|Ctso|229445|cathepsin O	AK020735|Ctso|229445|cathepsin O	AK040071|Ctso|229445|cathepsin O	AK049470|Ctso|229445|cathepsin O	AK166103|Ctso|229445|cathepsin O	BC098219|Ctso|229445|cathepsin O	AK165930|Ctso|229445|cathepsin O	BC044664|Ctso|229445|cathepsin O
mm9_v1_chr7_-_31840647_31840711	0.393968	HOX{A4,D4}.p2	AK002585|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_019503|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_052992|Fxyd1|56188|FXYD domain-containing ion transport regulator 1
mm9_v1_chr17_-_35971913_35971974	0.393835	HOX{A4,D4}.p2	AK188748|Tubb5|22154|tubulin, beta 5	AK196888|Tubb5|22154|tubulin, beta 5
mm9_v1_chr3_-_90318178_90318313	0.3913	HOX{A4,D4}.p2	AK017279|S100a1|20193|S100 calcium binding protein A1	AK168822|S100a1|20193|S100 calcium binding protein A1	AK002721|S100a1|20193|S100 calcium binding protein A1	AF087687|S100a1|20193|S100 calcium binding protein A1	AK012578|S100a1|20193|S100 calcium binding protein A1	NM_011309|S100a1|20193|S100 calcium binding protein A1	BC005590|S100a1|20193|S100 calcium binding protein A1
mm9_v1_chr3_-_146433544_146433656	0.391159	HOX{A4,D4}.p2	AK163585|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK148728|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164199|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr18_+_38456280_38456312	0.39108	HOX{A4,D4}.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chr16_-_37385024_37385045	0.389671	HOX{A4,D4}.p2	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr13_+_58909632_58909641	0.387885	HOX{A4,D4}.p2	AK147441|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr2_+_22478062_22478110	0.38428	HOX{A4,D4}.p2	AK141473|Gad2|14417|glutamic acid decarboxylase 2	L16980|Gad2|14417|glutamic acid decarboxylase 2
mm9_v1_chr8_+_94190341_94190551	0.383887	HOX{A4,D4}.p2	
mm9_v1_chr4_-_58219368_58219467	0.379758	HOX{A4,D4}.p2	AK052699|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	AF206329|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	NM_022814|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chrX_+_132806184_132806337	0.379298	HOX{A4,D4}.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr15_+_103284200_103284376	0.37881	HOX{A4,D4}.p2	AK040192|Nckap1l|105855|NCK associated protein 1 like	NM_153505|Nckap1l|105855|NCK associated protein 1 like	AK149862|Nckap1l|105855|NCK associated protein 1 like	AK083390|Nckap1l|105855|NCK associated protein 1 like	BC037096|Nckap1l|105855|NCK associated protein 1 like	AK134039|Nckap1l|105855|NCK associated protein 1 like	BC030040|Nckap1l|105855|NCK associated protein 1 like	BC007186|Nckap1l|105855|NCK associated protein 1 like
mm9_v1_chr7_+_138009310_138009466	0.378198	HOX{A4,D4}.p2	AK053879|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK083340|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK044224|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	BC020017|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	NM_133942|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm9_v1_chr10_+_80614066_80614217	0.377861	HOX{A4,D4}.p2	AK018596|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr3_-_62409061_62409061	0.371032	HOX{A4,D4}.p2	AK136826|Gpr149|229357|G protein-coupled receptor 149	NM_177346|Gpr149|229357|G protein-coupled receptor 149
mm9_v1_chr2_-_155979971_155980032	0.370514	HOX{A4,D4}.p2	AK046526|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr1_-_157264358_157264387	0.368541	HOX{A4,D4}.p2	HQ022853|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF131096|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF131098|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF131102|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF198104|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	HQ022845|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	HQ323679|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	HQ323680|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1
mm9_v1_chr8_+_56122680_56122847	0.368186	HOX{A4,D4}.p2	BC023461|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr10_+_59764990_59765134	0.367982	HOX{A4,D4}.p2	AK179432|Psap|19156|prosaposin	AK202324|Psap|19156|prosaposin	AK202355|Psap|19156|prosaposin
mm9_v1_chr2_-_77008655_77008700	0.364585	HOX{A4,D4}.p2	AK045498|Ccdc141|545428|coiled-coil domain containing 141	AK011952|Ccdc141|545428|coiled-coil domain containing 141	AK053175|Ccdc141|545428|coiled-coil domain containing 141	NM_001025576|Ccdc141|545428|coiled-coil domain containing 141	AK041121|Ccdc141|545428|coiled-coil domain containing 141
mm9_v1_chr18_+_69753035_69753127	0.36449	HOX{A4,D4}.p2	AK014343|Tcf4|21413|transcription factor 4	U16321|Tcf4|21413|transcription factor 4	AK132140|Tcf4|21413|transcription factor 4	BC014293|Tcf4|21413|transcription factor 4
mm9_v1_chr10_+_80642896_80643136	0.36031	HOX{A4,D4}.p2	AK210872|Eef2|13629|eukaryotic translation elongation factor 2	AK209228|Eef2|13629|eukaryotic translation elongation factor 2	AK202124|Eef2|13629|eukaryotic translation elongation factor 2	AK187806|Eef2|13629|eukaryotic translation elongation factor 2	AK193965|Eef2|13629|eukaryotic translation elongation factor 2	AK198543|Eef2|13629|eukaryotic translation elongation factor 2	AK199188|Eef2|13629|eukaryotic translation elongation factor 2	AK199799|Eef2|13629|eukaryotic translation elongation factor 2	AK203090|Eef2|13629|eukaryotic translation elongation factor 2	AK205853|Eef2|13629|eukaryotic translation elongation factor 2	AK207466|Eef2|13629|eukaryotic translation elongation factor 2	AK216165|Eef2|13629|eukaryotic translation elongation factor 2	AK216384|Eef2|13629|eukaryotic translation elongation factor 2	AK205723|Eef2|13629|eukaryotic translation elongation factor 2	AK164406|Eef2|13629|eukaryotic translation elongation factor 2	AK189872|Eef2|13629|eukaryotic translation elongation factor 2	AK195340|Eef2|13629|eukaryotic translation elongation factor 2	AK206829|Eef2|13629|eukaryotic translation elongation factor 2	AK207351|Eef2|13629|eukaryotic translation elongation factor 2	AK211185|Eef2|13629|eukaryotic translation elongation factor 2	AK217298|Eef2|13629|eukaryotic translation elongation factor 2	AK217627|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr8_-_88063071_88063191	0.358978	HOX{A4,D4}.p2	
mm9_v1_chr4_-_63707849_63707898	0.352029	HOX{A4,D4}.p2	D90343|Tnc|21923|tenascin C
mm9_v1_chr11_-_75346554_75346608	0.350897	HOX{A4,D4}.p2	
mm9_v1_chr18_+_78012506_78012506	0.349309	HOX{A4,D4}.p2	NM_007505|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr10_-_126558207_126558220	0.349301	HOX{A4,D4}.p2	NM_001171026|Os9|216440|amplified in osteosarcoma	NM_177614|Os9|216440|amplified in osteosarcoma
mm9_v1_chr10_-_116494883_116494953	0.348975	HOX{A4,D4}.p2	AK205966|Cct2|12461|chaperonin containing Tcp1, subunit 2 (beta)
mm9_v1_chr18_-_34738725_34738759	0.347135	HOX{A4,D4}.p2	AK006111|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	BC049625|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	AK131722|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	NM_080637|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr16_+_96689206_96689212	0.341434	HOX{A4,D4}.p2	BC061164|Pcp4|18546|Purkinje cell protein 4	NM_008791|Pcp4|18546|Purkinje cell protein 4
mm9_v1_chr1_-_173152548_173152594	0.341323	HOX{A4,D4}.p2	AK012264|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr5_-_131783731_131783795	0.340654	HOX{A4,D4}.p2	AK051382|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)	AK051281|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)
mm9_v1_chr13_+_54682957_54683061	0.340312	HOX{A4,D4}.p2	AK090305|Arl10|56795|ADP-ribosylation factor-like 10
mm9_v1_chr5_-_137755938_137756050	0.339425	HOX{A4,D4}.p2	
mm9_v1_chrX_-_35605626_35605657	0.332714	HOX{A4,D4}.p2	NM_172930|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chr9_+_14305055_14305063	0.332417	HOX{A4,D4}.p2	NM_023153|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chrX_+_35953741_35953908	0.332367	HOX{A4,D4}.p2	AK087975|Mcts1|68995|malignant T cell amplified sequence 1	AK005292|Mcts1|68995|malignant T cell amplified sequence 1	NM_026902|Mcts1|68995|malignant T cell amplified sequence 1	BC010486|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chr15_-_91403581_91403640	0.331738	HOX{A4,D4}.p2	BC119586|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	BC119587|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	AK041673|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13
mm9_v1_chr10_+_127522528_127522615	0.331566	HOX{A4,D4}.p2	AK186165|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chrX_+_71002395_71002441	0.327351	HOX{A4,D4}.p2	AK138168|Plxnb3|140571|plexin B3	AK138631|Plxnb3|140571|plexin B3	AK140240|Plxnb3|140571|plexin B3	NM_019587|Plxnb3|140571|plexin B3
mm9_v1_chr3_+_90318894_90318921	0.326789	HOX{A4,D4}.p2	X99921|S100a13|20196|S100 calcium binding protein A13
mm9_v1_chr1_-_95374913_95374964	0.325268	HOX{A4,D4}.p2	
mm9_v1_chr2_+_174167321_174167402	0.324819	HOX{A4,D4}.p2	
mm9_v1_chr19_+_38339167_38339370	0.324477	HOX{A4,D4}.p2	AK045443|Lgi1|56839|leucine-rich repeat LGI family, member 1	BC066090|Lgi1|56839|leucine-rich repeat LGI family, member 1	NM_020278|Lgi1|56839|leucine-rich repeat LGI family, member 1	AF246818|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK035873|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK031996|Lgi1|56839|leucine-rich repeat LGI family, member 1
mm9_v1_chr2_-_77541328_77541435	0.323332	HOX{A4,D4}.p2	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr3_-_95695852_95695897	0.322146	HOX{A4,D4}.p2	AF534879|BC028528|229600|cDNA sequence BC028528	NM_153513|BC028528|229600|cDNA sequence BC028528	BC028528|BC028528|229600|cDNA sequence BC028528
mm9_v1_chr3_+_36962577_36962599	0.321577	HOX{A4,D4}.p2	NM_009350|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	X84693|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	BC107346|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)
mm9_v1_chr16_-_21947543_21947585	0.321309	HOX{A4,D4}.p2	AK160292|Tmem41a|66664|transmembrane protein 41a	BC019770|Tmem41a|66664|transmembrane protein 41a
mm9_v1_chr12_+_110806715_110806837	0.32033	HOX{A4,D4}.p2	AK148955|Meg3|17263|maternally expressed 3
mm9_v1_chr14_-_60845511_60845640	0.318283	HOX{A4,D4}.p2	AK145818|BC010981|407830|cDNA sequence BC010981
mm9_v1_chr7_+_19791687_19791691	0.316206	HOX{A4,D4}.p2	AK215580|Eml2|72205|echinoderm microtubule associated protein like 2
mm9_v1_chr11_-_98590680_98590748	0.31421	HOX{A4,D4}.p2	AF126543|Med24|23989|mediator complex subunit 24	AK193218|Med24|23989|mediator complex subunit 24	AK020269|Med24|23989|mediator complex subunit 24	AK154618|Med24|23989|mediator complex subunit 24	AK158385|Med24|23989|mediator complex subunit 24	NM_011869|Med24|23989|mediator complex subunit 24
mm9_v1_chr11_-_73138102_73138139	0.3138	HOX{A4,D4}.p2	BC024934|Aspa|11484|aspartoacylase	AK002859|Aspa|11484|aspartoacylase	AK008354|Aspa|11484|aspartoacylase	NM_023113|Aspa|11484|aspartoacylase
mm9_v1_chr7_-_118214471_118214595	0.313611	HOX{A4,D4}.p2	AK153701|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr18_+_80315134_80315153	0.313129	HOX{A4,D4}.p2	AK010699|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm9_v1_chr9_-_7932402_7932403	0.311706	HOX{A4,D4}.p2	AK212471|Yap1|22601|yes-associated protein 1	AK215870|Yap1|22601|yes-associated protein 1
mm9_v1_chr10_+_73284612_73284690	0.311085	HOX{A4,D4}.p2	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chr3_-_72860864_72860987	0.300293	HOX{A4,D4}.p2	BC066059|Slitrk3|386750|SLIT and NTRK-like family, member 3	NM_198864|Slitrk3|386750|SLIT and NTRK-like family, member 3	AK139378|Slitrk3|386750|SLIT and NTRK-like family, member 3
mm9_v1_chrX_+_20271802_20271845	0.299221	HOX{A4,D4}.p2	AK214881|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr16_+_22857885_22858041	0.297961	HOX{A4,D4}.p2	NM_001190804|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	NM_001190805|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	NM_026400|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AK075785|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AK148511|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AK010861|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AK075953|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AK050500|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AK166730|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AK144516|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	BC003999|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	BC040747|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	BC018282|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11	AY054981|Dnajb11|67838|DnaJ (Hsp40) homolog, subfamily B, member 11
mm9_v1_chr9_-_112134984_112135004	0.297889	HOX{A4,D4}.p2	NM_001177616|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr6_-_23600205_23600304	0.292699	HOX{A4,D4}.p2	BC116423|Rnf133|386611|ring finger protein 133	BC116424|Rnf133|386611|ring finger protein 133	AK028082|Rnf133|386611|ring finger protein 133	NM_198251|Rnf133|386611|ring finger protein 133
mm9_v1_chr9_+_18925400_18925400	0.290503	HOX{A4,D4}.p2	BC106988|Olfr836|258557|olfactory receptor 836	BC106989|Olfr836|258557|olfactory receptor 836	NM_146564|Olfr836|258557|olfactory receptor 836
mm9_v1_chr11_+_29640992_29641009	0.28879	HOX{A4,D4}.p2	AK206171|Rtn4|68585|reticulon 4
mm9_v1_chr13_-_102453449_102453477	0.288526	HOX{A4,D4}.p2	AK138868|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK049798|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr19_+_53214934_53215104	0.287412	HOX{A4,D4}.p2	NM_001164099|Add3|27360|adducin 3 (gamma)	NM_001164101|Add3|27360|adducin 3 (gamma)	AK019491|Add3|27360|adducin 3 (gamma)	AK028481|Add3|27360|adducin 3 (gamma)	AK083939|Add3|27360|adducin 3 (gamma)	BC029196|Add3|27360|adducin 3 (gamma)	AK035151|Add3|27360|adducin 3 (gamma)
mm9_v1_chr14_+_117324518_117324572	0.286784	HOX{A4,D4}.p2	AK164668|Gpc6|23888|glypican 6	AK135442|Gpc6|23888|glypican 6	NM_001079844|Gpc6|23888|glypican 6	NM_011821|Gpc6|23888|glypican 6
mm9_v1_chr8_+_11558428_11558472	0.279804	HOX{A4,D4}.p2	AK035490|Ing1|26356|inhibitor of growth family, member 1	AK157424|Ing1|26356|inhibitor of growth family, member 1	AF177756|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr10_+_126921038_126921212	0.276995	HOX{A4,D4}.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr11_+_87394647_87394667	0.272988	HOX{A4,D4}.p2	AB078010|Sept4|18952|septin 4
mm9_v1_chr17_-_34253887_34254086	0.268504	HOX{A4,D4}.p2	AK179882|Brd2|14312|bromodomain containing 2	AK205877|Brd2|14312|bromodomain containing 2	AK218127|Brd2|14312|bromodomain containing 2	AB212273|Brd2|14312|bromodomain containing 2	AB010248|Brd2|14312|bromodomain containing 2
mm9_v1_chr16_-_59027730_59027752	0.268062	HOX{A4,D4}.p2	NM_146321|Olfr186|258318|olfactory receptor 186	BC150713|Olfr186|258318|olfactory receptor 186
mm9_v1_chr10_-_18463500_18463563	0.267916	HOX{A4,D4}.p2	AK165602|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK148343|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147963|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147679|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	NM_001033258|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed
mm9_v1_chr3_-_117063317_117063389	0.266605	HOX{A4,D4}.p2	BC082323|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137701|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137702|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK129149|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr16_-_84831712_84831743	0.265788	HOX{A4,D4}.p2	U77128|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr2_+_34729897_34729955	0.265417	HOX{A4,D4}.p2	AK033810|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	AK085616|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	NM_030021|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene
mm9_v1_chr8_+_4238718_4238771	0.26268	HOX{A4,D4}.p2	NM_001042557|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_001164172|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_011944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022112|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022113|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr19_-_7877136_7877156	0.260628	HOX{A4,D4}.p2	BC014805|BC014805|236149|cDNA sequence BC014805	NM_146232|BC014805|236149|cDNA sequence BC014805
mm9_v1_chr9_-_53012444_53012529	0.260422	HOX{A4,D4}.p2	AK166787|Ddx10|77591|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm9_v1_chr3_-_84024766_84024812	0.259634	HOX{A4,D4}.p2	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr4_+_102243272_102243317	0.259336	HOX{A4,D4}.p2	AK011999|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC007155|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chrX_-_7318412_7318449	0.258095	HOX{A4,D4}.p2	BC053918|Ccdc120|54648|coiled-coil domain containing 120	NM_207202|Ccdc120|54648|coiled-coil domain containing 120
mm9_v1_chr1_+_63492447_63492511	0.255056	HOX{A4,D4}.p2	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr11_+_29618696_29618843	0.254102	HOX{A4,D4}.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr3_-_144372258_144372323	0.252737	HOX{A4,D4}.p2	AK178501|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr9_-_75238110_75238135	0.251714	HOX{A4,D4}.p2	BC024684|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr10_+_42550365_42550378	0.249415	HOX{A4,D4}.p2	AK017703|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr14_+_14286471_14286627	0.248945	HOX{A4,D4}.p2	NM_001163032|Synpr|72003|synaptoporin	AK033999|Synpr|72003|synaptoporin	AK032442|Synpr|72003|synaptoporin	AK045705|Synpr|72003|synaptoporin	AK049661|Synpr|72003|synaptoporin
mm9_v1_chr17_-_27717411_27717581	0.246031	HOX{A4,D4}.p2	AK195385|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	AK205576|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	AK003601|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	AK211644|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm9_v1_chr2_+_157105117_157105161	0.245429	HOX{A4,D4}.p2	AK153952|Rpn2|20014|ribophorin II
mm9_v1_chr19_+_21354915_21354945	0.244743	HOX{A4,D4}.p2	AK185148|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr11_-_120092784_120092898	0.243491	HOX{A4,D4}.p2	AK034741|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene	AK162948|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene	AK013668|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene
mm9_v1_chr1_+_154621524_154621665	0.243161	HOX{A4,D4}.p2	AK209951|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK205293|Arpc5|67771|actin related protein 2/3 complex, subunit 5
mm9_v1_chr16_-_22857557_22857644	0.242658	HOX{A4,D4}.p2	AK133804|Tbccd1|70573|TBCC domain containing 1	BC082558|Tbccd1|70573|TBCC domain containing 1	AK039905|Tbccd1|70573|TBCC domain containing 1	AK040787|Tbccd1|70573|TBCC domain containing 1	AK043059|Tbccd1|70573|TBCC domain containing 1	AK035909|Tbccd1|70573|TBCC domain containing 1	AK017705|Tbccd1|70573|TBCC domain containing 1	NM_001081368|Tbccd1|70573|TBCC domain containing 1
mm9_v1_chr7_+_138704223_138704357	0.24121	HOX{A4,D4}.p2	AF149822|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK190470|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr16_+_23146631_23146693	0.240874	HOX{A4,D4}.p2	AK041214|Adipoq|11450|adiponectin, C1Q and collagen domain containing	AX767957|Adipoq|11450|adiponectin, C1Q and collagen domain containing	U37222|Adipoq|11450|adiponectin, C1Q and collagen domain containing	AK003138|Adipoq|11450|adiponectin, C1Q and collagen domain containing	BC028770|Adipoq|11450|adiponectin, C1Q and collagen domain containing
mm9_v1_chr17_+_21672490_21672637	0.239174	HOX{A4,D4}.p2	AK032299|Zfp52|22710|zinc finger protein 52	NM_144515|Zfp52|22710|zinc finger protein 52	BC021527|Zfp52|22710|zinc finger protein 52
mm9_v1_chr2_+_62502329_62502489	0.238181	HOX{A4,D4}.p2	AK046347|Gca|227960|grancalcin	AK050540|Gca|227960|grancalcin	AK033740|Gca|227960|grancalcin	AK040549|Gca|227960|grancalcin	AK049317|Gca|227960|grancalcin	AK078915|Gca|227960|grancalcin	NM_145523|Gca|227960|grancalcin	AF518325|Gca|227960|grancalcin	BC021450|Gca|227960|grancalcin	AB088388|Gca|227960|grancalcin
mm9_v1_chr17_+_70871444_70871503	0.237819	HOX{A4,D4}.p2	NM_001128180|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK161941|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK163689|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr9_+_21731914_21732108	0.236924	HOX{A4,D4}.p2	AK011114|Ccdc159|67119|coiled-coil domain containing 159	NM_001164614|Ccdc159|67119|coiled-coil domain containing 159	NM_025977|Ccdc159|67119|coiled-coil domain containing 159	BC120702|Ccdc159|67119|coiled-coil domain containing 159	BC120704|Ccdc159|67119|coiled-coil domain containing 159	BC145014|Ccdc159|67119|coiled-coil domain containing 159	AK148448|Ccdc159|67119|coiled-coil domain containing 159	AK042884|Ccdc159|67119|coiled-coil domain containing 159	AK016073|Ccdc159|67119|coiled-coil domain containing 159
mm9_v1_chr3_-_146444377_146444386	0.236152	HOX{A4,D4}.p2	AK150122|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK150134|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164200|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr12_+_118896501_118896507	0.235996	HOX{A4,D4}.p2	AK083591|Rapgef5|217944|Rap guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr5_+_52755183_52755234	0.234439	HOX{A4,D4}.p2	AK145194|Sod3|20657|superoxide dismutase 3, extracellular	AK075570|Sod3|20657|superoxide dismutase 3, extracellular	BC010975|Sod3|20657|superoxide dismutase 3, extracellular
mm9_v1_chr9_-_42776275_42776291	0.232226	HOX{A4,D4}.p2	AK162687|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr7_-_29678773_29678890	0.230471	HOX{A4,D4}.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chr12_+_85702917_85702967	0.229739	HOX{A4,D4}.p2	BC132168|Coq6|217707|coenzyme Q6 homolog (yeast)	BC132170|Coq6|217707|coenzyme Q6 homolog (yeast)	NM_172582|Coq6|217707|coenzyme Q6 homolog (yeast)	BC088736|Coq6|217707|coenzyme Q6 homolog (yeast)	AK131889|Coq6|217707|coenzyme Q6 homolog (yeast)
mm9_v1_chr6_-_38075416_38075515	0.22886	HOX{A4,D4}.p2	AK141785|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr18_-_36675393_36675437	0.227027	HOX{A4,D4}.p2	L07264|Hbegf|15200|heparin-binding EGF-like growth factor	AK145548|Hbegf|15200|heparin-binding EGF-like growth factor	AK160575|Hbegf|15200|heparin-binding EGF-like growth factor	BC089607|Hbegf|15200|heparin-binding EGF-like growth factor	AK052084|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr1_-_170362298_170362315	0.22456	HOX{A4,D4}.p2	AK045252|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144346|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144446|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr17_-_57183232_57183299	0.221387	HOX{A4,D4}.p2	AK198167|Slc25a23|66972|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm9_v1_chr18_+_86881034_86881047	0.221334	HOX{A4,D4}.p2	AK042555|Cbln2|12405|cerebellin 2 precursor protein
mm9_v1_chr18_+_37454493_37454629	0.220356	HOX{A4,D4}.p2	NM_053127|Pcdhb2|93873|protocadherin beta 2	BC021789|Pcdhb2|93873|protocadherin beta 2	BC141154|Pcdhb2|93873|protocadherin beta 2	AY013781|Pcdhb2|93873|protocadherin beta 2
mm9_v1_chr1_-_108610520_108610597	0.220227	HOX{A4,D4}.p2	BC095964|Bcl2|12043|B-cell leukemia/lymphoma 2	AK042257|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr17_-_57226987_57227204	0.218962	HOX{A4,D4}.p2	BC054831|Tubb4|22153|tubulin, beta 4	AK013717|Tubb4|22153|tubulin, beta 4	BC049112|Tubb4|22153|tubulin, beta 4	NM_009451|Tubb4|22153|tubulin, beta 4
mm9_v1_chr11_-_59005394_59005458	0.218232	HOX{A4,D4}.p2	NM_008193|Guk1|14923|guanylate kinase 1
mm9_v1_chr15_-_33617572_33617639	0.218213	HOX{A4,D4}.p2	AK087510|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	AK173253|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	BC079547|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	NM_001085421|Tspyl5|239364|testis-specific protein, Y-encoded-like 5
mm9_v1_chr9_-_112134930_112134962	0.217614	HOX{A4,D4}.p2	AK032417|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr6_+_124948627_124948627	0.215735	HOX{A4,D4}.p2	AK148352|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145926|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr18_+_37170365_37170627	0.210969	HOX{A4,D4}.p2	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr3_-_80717578_80717587	0.210258	HOX{A4,D4}.p2	AK082578|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr18_+_37915375_37915594	0.21016	HOX{A4,D4}.p2	BC064675|Pcdhga11|93723|protocadherin gamma subfamily A, 11	NM_033594|Pcdhga11|93723|protocadherin gamma subfamily A, 11	BC059837|Pcdhga11|93723|protocadherin gamma subfamily A, 11	AY013794|Pcdhga11|93723|protocadherin gamma subfamily A, 11
mm9_v1_chr17_-_24211852_24211965	0.207583	HOX{A4,D4}.p2	AK079579|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1
mm9_v1_chr9_+_109905895_109906037	0.206973	HOX{A4,D4}.p2	
mm9_v1_chr3_+_84470230_84470299	0.206936	HOX{A4,D4}.p2	BC096432|Tmem154|320782|transmembrane protein 154	AK170385|Tmem154|320782|transmembrane protein 154	AK170665|Tmem154|320782|transmembrane protein 154	AK170626|Tmem154|320782|transmembrane protein 154
mm9_v1_chr10_+_21602148_21602174	0.206191	HOX{A4,D4}.p2	AK043284|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr13_+_58909254_58909275	0.206006	HOX{A4,D4}.p2	AK147391|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr18_-_36675458_36675463	0.205389	HOX{A4,D4}.p2	AK164309|Hbegf|15200|heparin-binding EGF-like growth factor	NM_010415|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr16_-_85120798_85120921	0.204021	HOX{A4,D4}.p2	AK194233|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr7_+_53138934_53138972	0.20319	HOX{A4,D4}.p2	
mm9_v1_chr4_-_137869546_137869914	0.201535	HOX{A4,D4}.p2	AK219773|Pink1|68943|PTEN induced putative kinase 1	AK196813|Pink1|68943|PTEN induced putative kinase 1	AK190338|Pink1|68943|PTEN induced putative kinase 1	AK190010|Pink1|68943|PTEN induced putative kinase 1	AK219694|Pink1|68943|PTEN induced putative kinase 1	AK213324|Pink1|68943|PTEN induced putative kinase 1	AK218284|Pink1|68943|PTEN induced putative kinase 1	AK205601|Pink1|68943|PTEN induced putative kinase 1	AK182588|Pink1|68943|PTEN induced putative kinase 1	AK219274|Pink1|68943|PTEN induced putative kinase 1	AK179666|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr11_+_29642059_29642120	0.201527	HOX{A4,D4}.p2	AK213159|Rtn4|68585|reticulon 4	AK218108|Rtn4|68585|reticulon 4
mm9_v1_chr3_-_27795287_27795289	0.201336	HOX{A4,D4}.p2	AK053134|Tmem212|208613|transmembrane protein 212	BC119391|Tmem212|208613|transmembrane protein 212	BC119393|Tmem212|208613|transmembrane protein 212	NM_001164437|Tmem212|208613|transmembrane protein 212
mm9_v1_chr10_+_80642285_80642527	0.200968	HOX{A4,D4}.p2	AK197735|Eef2|13629|eukaryotic translation elongation factor 2	AK181350|Eef2|13629|eukaryotic translation elongation factor 2	AK179706|Eef2|13629|eukaryotic translation elongation factor 2	AK180098|Eef2|13629|eukaryotic translation elongation factor 2	AK187232|Eef2|13629|eukaryotic translation elongation factor 2	AK187739|Eef2|13629|eukaryotic translation elongation factor 2	AK188630|Eef2|13629|eukaryotic translation elongation factor 2	AK192640|Eef2|13629|eukaryotic translation elongation factor 2	AK196185|Eef2|13629|eukaryotic translation elongation factor 2	AK198959|Eef2|13629|eukaryotic translation elongation factor 2	AK199367|Eef2|13629|eukaryotic translation elongation factor 2	AK204209|Eef2|13629|eukaryotic translation elongation factor 2	AK205796|Eef2|13629|eukaryotic translation elongation factor 2	AK212960|Eef2|13629|eukaryotic translation elongation factor 2	AK215832|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr5_-_104450856_104450959	0.198832	HOX{A4,D4}.p2	AK049355|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11
mm9_v1_chr17_+_71553920_71554003	0.197751	HOX{A4,D4}.p2	AK165218|Lpin2|64898|lipin 2	AK050018|Lpin2|64898|lipin 2	NM_001164885|Lpin2|64898|lipin 2
mm9_v1_chr19_+_43514902_43514932	0.195461	HOX{A4,D4}.p2	NM_031396|Cnnm1|83674|cyclin M1
mm9_v1_chr2_+_97307652_97307938	0.194367	HOX{A4,D4}.p2	AK032467|Lrrc4c|241568|leucine rich repeat containing 4C	AK032088|Lrrc4c|241568|leucine rich repeat containing 4C	NM_178725|Lrrc4c|241568|leucine rich repeat containing 4C	BC094588|Lrrc4c|241568|leucine rich repeat containing 4C
mm9_v1_chr14_-_73768214_73768311	0.193323	HOX{A4,D4}.p2	AK198503|Itm2b|16432|integral membrane protein 2B	AK197360|Itm2b|16432|integral membrane protein 2B	AB030204|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr8_-_39724524_39724561	0.193005	HOX{A4,D4}.p2	AK048960|Sgcz|244431|sarcoglycan zeta	AK136779|Sgcz|244431|sarcoglycan zeta	NM_145841|Sgcz|244431|sarcoglycan zeta
mm9_v1_chr17_+_43526389_43526484	0.191703	HOX{A4,D4}.p2	NM_001081178|Gpr116|224792|G protein-coupled receptor 116
mm9_v1_chr16_+_59302980_59302980	0.190837	HOX{A4,D4}.p2	BC128025|Olfr203|258479|olfactory receptor 203	NM_146486|Olfr203|258479|olfactory receptor 203
mm9_v1_chr15_+_44619312_44619329	0.190104	HOX{A4,D4}.p2	AK010129|2310069G16Rik|69659|RIKEN cDNA 2310069G16 gene
mm9_v1_chr6_+_57652448_57652452	0.189908	HOX{A4,D4}.p2	NM_133737|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2
mm9_v1_chr11_+_29642253_29642464	0.189842	HOX{A4,D4}.p2	AK186869|Rtn4|68585|reticulon 4	AK186438|Rtn4|68585|reticulon 4	AK047253|Rtn4|68585|reticulon 4
mm9_v1_chr5_+_117724658_117724663	0.189628	HOX{A4,D4}.p2	AK013486|Taok3|330177|TAO kinase 3
mm9_v1_chr2_+_109739389_109739489	0.189529	HOX{A4,D4}.p2	AK078903|Lin7c|22343|lin-7 homolog C (C. elegans)	AK049807|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr8_+_126547293_126547372	0.18691	HOX{A4,D4}.p2	BC151125|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	NM_001029876|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm9_v1_chr17_-_37088436_37088450	0.186117	HOX{A4,D4}.p2	EF528576|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm9_v1_chr8_+_125597668_125597810	0.186029	HOX{A4,D4}.p2	AK184026|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr7_+_98239427_98239516	0.185951	HOX{A4,D4}.p2	AF388675|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr14_-_78488780_78488813	0.184107	HOX{A4,D4}.p2	BC120488|AU021034|219170|expressed sequence AU021034	BC120490|AU021034|219170|expressed sequence AU021034	AK047611|AU021034|219170|expressed sequence AU021034	AK034132|AU021034|219170|expressed sequence AU021034	NM_177629|AU021034|219170|expressed sequence AU021034
mm9_v1_chr4_+_86221552_86221613	0.183589	HOX{A4,D4}.p2	NM_178376|Rraga|68441|Ras-related GTP binding A	BC048245|Rraga|68441|Ras-related GTP binding A	AK004955|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr2_+_174167172_174167173	0.18324	HOX{A4,D4}.p2	BC048834|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr2_-_25325196_25325238	0.182231	HOX{A4,D4}.p2	X89222|Ptgds|19215|prostaglandin D2 synthase (brain)
mm9_v1_chr10_+_34018323_34018472	0.182184	HOX{A4,D4}.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chrX_-_7709452_7709736	0.181812	HOX{A4,D4}.p2	AF513713|Wdr13|73447|WD repeat domain 13	BC125287|Wdr13|73447|WD repeat domain 13	BC120553|Wdr13|73447|WD repeat domain 13	AK017549|Wdr13|73447|WD repeat domain 13	AF353243|Wdr13|73447|WD repeat domain 13	BC037502|Wdr13|73447|WD repeat domain 13	BC108332|Wdr13|73447|WD repeat domain 13
mm9_v1_chr2_-_48804794_48804803	0.181698	HOX{A4,D4}.p2	AK145454|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr16_+_10488270_10488391	0.181154	HOX{A4,D4}.p2	AK040723|Ciita|12265|class II transactivator	AK155184|Ciita|12265|class II transactivator	AF042158|Ciita|12265|class II transactivator	AK153609|Ciita|12265|class II transactivator	NM_007575|Ciita|12265|class II transactivator	U60653|Ciita|12265|class II transactivator	BC107330|Ciita|12265|class II transactivator	BC107331|Ciita|12265|class II transactivator
mm9_v1_chrY_-_623013_623055	0.180914	HOX{A4,D4}.p2	AK154382|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	AJ007376|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	BC051046|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	NM_012008|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr5_-_99681835_99681949	0.180364	HOX{A4,D4}.p2	AK028756|Rasgef1b|320292|RasGEF domain family, member 1B	BC052726|Rasgef1b|320292|RasGEF domain family, member 1B	AK090085|Rasgef1b|320292|RasGEF domain family, member 1B	AK149812|Rasgef1b|320292|RasGEF domain family, member 1B	AY129963|Rasgef1b|320292|RasGEF domain family, member 1B	BC050858|Rasgef1b|320292|RasGEF domain family, member 1B	NM_145839|Rasgef1b|320292|RasGEF domain family, member 1B	NM_181318|Rasgef1b|320292|RasGEF domain family, member 1B
mm9_v1_chr3_+_88168495_88168520	0.180212	HOX{A4,D4}.p2	AK139144|Paqr6|68957|progestin and adipoQ receptor family member VI	AY424295|Paqr6|68957|progestin and adipoQ receptor family member VI	NM_198410|Paqr6|68957|progestin and adipoQ receptor family member VI
mm9_v1_chr10_-_58138401_58138443	0.177064	HOX{A4,D4}.p2	BC068315|Edar|13608|ectodysplasin-A receptor	AF160502|Edar|13608|ectodysplasin-A receptor	NM_010100|Edar|13608|ectodysplasin-A receptor
mm9_v1_chr7_+_138589597_138589692	0.176206	HOX{A4,D4}.p2	AK078636|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain
mm9_v1_chr4_-_9570815_9570863	0.175378	HOX{A4,D4}.p2	AF302654|Asph|65973|aspartate-beta-hydroxylase	AF289490|Asph|65973|aspartate-beta-hydroxylase	AF289491|Asph|65973|aspartate-beta-hydroxylase	AF289492|Asph|65973|aspartate-beta-hydroxylase	AF221854|Asph|65973|aspartate-beta-hydroxylase	AF223413|Asph|65973|aspartate-beta-hydroxylase	NM_001177852|Asph|65973|aspartate-beta-hydroxylase	NM_001177853|Asph|65973|aspartate-beta-hydroxylase	NM_001177854|Asph|65973|aspartate-beta-hydroxylase	NM_133723|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr2_+_68973856_68973946	0.174075	HOX{A4,D4}.p2	NM_181547|Nostrin|329416|nitric oxide synthase trafficker	AK052926|Nostrin|329416|nitric oxide synthase trafficker	BC069942|Nostrin|329416|nitric oxide synthase trafficker	AY280963|Nostrin|329416|nitric oxide synthase trafficker	AJ564264|Nostrin|329416|nitric oxide synthase trafficker
mm9_v1_chr1_+_43245927_43245978	0.173687	HOX{A4,D4}.p2	AK088551|Rpl29|19944|ribosomal protein L29	BC094039|Rpl29|19944|ribosomal protein L29	BC096575|Rpl29|19944|ribosomal protein L29	BC002062|Rpl29|19944|ribosomal protein L29	BC019179|Rpl29|19944|ribosomal protein L29	BC082292|Rpl29|19944|ribosomal protein L29	L08651|Rpl29|19944|ribosomal protein L29
mm9_v1_chr10_+_117641997_117642023	0.173448	HOX{A4,D4}.p2	AJ249491|Il22|50929|interleukin 22	BC104348|Il22|50929|interleukin 22	BC104349|Il22|50929|interleukin 22	NM_016971|Il22|50929|interleukin 22	BC116235|Il22|50929|interleukin 22
mm9_v1_chr11_+_54251680_54251744	0.173382	HOX{A4,D4}.p2	NM_173753|Fnip1|216742|folliculin interacting protein 1	BC079892|Fnip1|216742|folliculin interacting protein 1	AK122574|Fnip1|216742|folliculin interacting protein 1
mm9_v1_chr15_-_93426312_93426402	0.173335	HOX{A4,D4}.p2	AK153711|Prickle1|106042|prickle homolog 1 (Drosophila)	NM_001033217|Prickle1|106042|prickle homolog 1 (Drosophila)
mm9_v1_chr2_+_84574217_84574360	0.173329	HOX{A4,D4}.p2	AB098743|Ypel4|241525|yippee-like 4 (Drosophila)	NM_001005342|Ypel4|241525|yippee-like 4 (Drosophila)
mm9_v1_chr11_-_79344055_79344121	0.17199	HOX{A4,D4}.p2	AK046407|Evi2a|14017|ecotropic viral integration site 2a	BC038124|Evi2a|14017|ecotropic viral integration site 2a	AK170527|Evi2a|14017|ecotropic viral integration site 2a	AK005353|Evi2a|14017|ecotropic viral integration site 2a	NM_146023|Evi2b|216984|ecotropic viral integration site 2b	NM_001033711|Evi2a|14017|ecotropic viral integration site 2a	NM_010161|Evi2a|14017|ecotropic viral integration site 2a
mm9_v1_chr7_-_17613079_17613266	0.171848	HOX{A4,D4}.p2	U12204|Ppp5c|19060|protein phosphatase 5, catalytic subunit	BC003744|Ppp5c|19060|protein phosphatase 5, catalytic subunit	AF018262|Ppp5c|19060|protein phosphatase 5, catalytic subunit	NM_011155|Ppp5c|19060|protein phosphatase 5, catalytic subunit
mm9_v1_chr7_-_35048648_35048654	0.170659	HOX{A4,D4}.p2	AK129125|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chr7_+_29178207_29178208	0.170584	HOX{A4,D4}.p2	AK183117|Paf1|54624|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
mm9_v1_chr7_-_38554642_38554770	0.169855	HOX{A4,D4}.p2	AK122270|Zfp536|243937|zinc finger protein 536	AK030633|Zfp536|243937|zinc finger protein 536	NM_172385|Zfp536|243937|zinc finger protein 536
mm9_v1_chr1_+_83156336_83156343	0.169025	HOX{A4,D4}.p2	AK016977|Wdr69|71227|WD repeat domain 69	BC049704|Wdr69|71227|WD repeat domain 69	BC144994|Wdr69|71227|WD repeat domain 69	BC145995|Wdr69|71227|WD repeat domain 69	NM_027725|Wdr69|71227|WD repeat domain 69	AK016201|Wdr69|71227|WD repeat domain 69
mm9_v1_chr6_-_82889660_82889681	0.167615	HOX{A4,D4}.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr10_-_127188724_127188780	0.167259	HOX{A4,D4}.p2	BC125279|Gpr182|11536|G protein-coupled receptor 182	D17292|Gpr182|11536|G protein-coupled receptor 182
mm9_v1_chr3_+_89263039_89263081	0.166174	HOX{A4,D4}.p2	NM_026784|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chr1_-_65119965_65120107	0.165302	HOX{A4,D4}.p2	M64544|Crygc|12966|crystallin, gamma C	NM_007775|Crygc|12966|crystallin, gamma C	BC056454|Crygc|12966|crystallin, gamma C	EF426301|Crygc|12966|crystallin, gamma C	EF426302|Crygc|12966|crystallin, gamma C	NM_001082573|Crygc|12966|crystallin, gamma C
mm9_v1_chr1_-_174128558_174128619	0.164933	HOX{A4,D4}.p2	BC092079|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr10_-_12581443_12581532	0.164579	HOX{A4,D4}.p2	Y12229|Utrn|22288|utrophin	NM_011682|Utrn|22288|utrophin
mm9_v1_chr11_+_83004798_83004893	0.163901	HOX{A4,D4}.p2	AF099974|Slfn3|20557|schlafen 3	NM_011409|Slfn3|20557|schlafen 3	BC132627|Slfn3|20557|schlafen 3	BC138070|Slfn3|20557|schlafen 3	BC145134|Slfn3|20557|schlafen 3
mm9_v1_chr17_-_27650285_27650347	0.163349	HOX{A4,D4}.p2	BC072635|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr1_-_167865030_167865141	0.163331	HOX{A4,D4}.p2	AJ296212|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198933|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198934|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489475|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489474|Pou2f1|18986|POU domain, class 2, transcription factor 1	X56230|Pou2f1|18986|POU domain, class 2, transcription factor 1
mm9_v1_chr12_-_111840150_111840172	0.162794	HOX{A4,D4}.p2	
mm9_v1_chr11_+_79404517_79404662	0.162215	HOX{A4,D4}.p2	AK147344|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)	AK147219|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr17_-_35975075_35975143	0.161127	HOX{A4,D4}.p2	X04663|Tubb5|22154|tubulin, beta 5
mm9_v1_chr19_-_23522811_23522929	0.161063	HOX{A4,D4}.p2	AK035566|Mamdc2|71738|MAM domain containing 2	NM_174857|Mamdc2|71738|MAM domain containing 2	BC042773|Mamdc2|71738|MAM domain containing 2	AK154219|Mamdc2|71738|MAM domain containing 2	AK004794|Mamdc2|71738|MAM domain containing 2
mm9_v1_chrX_+_7274259_7274353	0.160019	HOX{A4,D4}.p2	NM_173747|Gpkow|209416|G patch domain and KOW motifs	AK017864|Gpkow|209416|G patch domain and KOW motifs	AK144167|Gpkow|209416|G patch domain and KOW motifs	AK028433|Gpkow|209416|G patch domain and KOW motifs	BC092224|Gpkow|209416|G patch domain and KOW motifs
mm9_v1_chr4_+_154932115_154932142	0.159647	HOX{A4,D4}.p2	
mm9_v1_chr18_-_81183260_81183316	0.158312	HOX{A4,D4}.p2	BC072631|Sall3|20689|sal-like 3 (Drosophila)	NM_178280|Sall3|20689|sal-like 3 (Drosophila)
mm9_v1_chr3_+_20008792_20008792	0.15756	HOX{A4,D4}.p2	BC039796|Hltf|20585|helicase-like transcription factor
mm9_v1_chr11_-_73137838_73138062	0.157285	HOX{A4,D4}.p2	AK035910|Aspa|11484|aspartoacylase	AF212998|Aspa|11484|aspartoacylase
mm9_v1_chr15_+_35301320_35301357	0.156868	HOX{A4,D4}.p2	BC158052|Vps13b|666173|vacuolar protein sorting 13B (yeast)
mm9_v1_chr4_-_134409199_134409236	0.15618	HOX{A4,D4}.p2	BC042733|Tmem57|66146|transmembrane protein 57	BC044802|Tmem57|66146|transmembrane protein 57	BC037192|Tmem57|66146|transmembrane protein 57	BC019186|Tmem57|66146|transmembrane protein 57	AK020354|Tmem57|66146|transmembrane protein 57
mm9_v1_chr16_-_21947587_21947627	0.155826	HOX{A4,D4}.p2	AK013518|Tmem41a|66664|transmembrane protein 41a	BC011512|Tmem41a|66664|transmembrane protein 41a	AK007685|Tmem41a|66664|transmembrane protein 41a	NM_025693|Tmem41a|66664|transmembrane protein 41a
mm9_v1_chr1_-_55283189_55283376	0.155656	HOX{A4,D4}.p2	BC026871|Rftn2|74013|raftlin family member 2	AK014318|Rftn2|74013|raftlin family member 2
mm9_v1_chr18_+_12287232_12287358	0.154287	HOX{A4,D4}.p2	AK167309|Riok3|66878|RIO kinase 3 (yeast)	AK004748|Riok3|66878|RIO kinase 3 (yeast)	AK134327|Riok3|66878|RIO kinase 3 (yeast)	AK170882|Riok3|66878|RIO kinase 3 (yeast)	AK054308|Riok3|66878|RIO kinase 3 (yeast)	BC033271|Riok3|66878|RIO kinase 3 (yeast)	AK131635|Riok3|66878|RIO kinase 3 (yeast)	AK147074|Riok3|66878|RIO kinase 3 (yeast)	NM_024182|Riok3|66878|RIO kinase 3 (yeast)
mm9_v1_chr8_+_94192087_94192089	0.154227	HOX{A4,D4}.p2	
mm9_v1_chr11_-_79317583_79317590	0.15414	HOX{A4,D4}.p2	NM_019409|Omg|18377|oligodendrocyte myelin glycoprotein	AK136910|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr3_+_90407688_90407708	0.153853	HOX{A4,D4}.p2	AK160522|S100a4|20198|S100 calcium binding protein A4	D00208|S100a4|20198|S100 calcium binding protein A4	NM_011311|S100a4|20198|S100 calcium binding protein A4	AK003065|S100a4|20198|S100 calcium binding protein A4
mm9_v1_chr7_+_129776837_129777102	0.153522	HOX{A4,D4}.p2	BC038148|Prkcb|18751|protein kinase C, beta	BC048553|Prkcb|18751|protein kinase C, beta
mm9_v1_chr9_-_26798845_26798969	0.151012	HOX{A4,D4}.p2	AK207169|Acad8|66948|acyl-Coenzyme A dehydrogenase family, member 8	AK211554|Acad8|66948|acyl-Coenzyme A dehydrogenase family, member 8
mm9_v1_chr7_+_11032137_11032137	0.150675	HOX{A4,D4}.p2	BC138174|Vmn1r67|171263|vomeronasal 1 receptor 67	BC145742|Vmn1r67|171263|vomeronasal 1 receptor 67	NM_134229|Vmn1r67|171263|vomeronasal 1 receptor 67
mm9_v1_chr17_+_46818005_46818130	0.150202	HOX{A4,D4}.p2	AK010863|Mea1|17256|male enhanced antigen 1	AK008305|Mea1|17256|male enhanced antigen 1	AK008194|Mea1|17256|male enhanced antigen 1	AK010904|Mea1|17256|male enhanced antigen 1	AK010962|Mea1|17256|male enhanced antigen 1	AK012617|Mea1|17256|male enhanced antigen 1	AK005369|Mea1|17256|male enhanced antigen 1	AK005106|Mea1|17256|male enhanced antigen 1	L10401|Mea1|17256|male enhanced antigen 1	M27938|Mea1|17256|male enhanced antigen 1	NM_010787|Mea1|17256|male enhanced antigen 1	AK011189|Mea1|17256|male enhanced antigen 1	D17341|Mea1|17256|male enhanced antigen 1
mm9_v1_chrX_+_130939318_130939458	0.148895	HOX{A4,D4}.p2	AK038488|Drp2|13497|dystrophin related protein 2	NM_010078|Drp2|13497|dystrophin related protein 2	AK081426|Drp2|13497|dystrophin related protein 2	AK034383|Drp2|13497|dystrophin related protein 2	BC125345|Drp2|13497|dystrophin related protein 2	BC125347|Drp2|13497|dystrophin related protein 2
mm9_v1_chrX_+_45976982_45977308	0.148155	HOX{A4,D4}.p2	NM_001166450|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	BC048692|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155812|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155813|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr17_+_74154214_74154436	0.148117	HOX{A4,D4}.p2	AK051717|Ehd3|57440|EH-domain containing 3	AF506002|Ehd3|57440|EH-domain containing 3	BC046596|Ehd3|57440|EH-domain containing 3
mm9_v1_chrX_-_163645313_163645419	0.147844	HOX{A4,D4}.p2	AK205579|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr14_+_124059330_124059403	0.147284	HOX{A4,D4}.p2	AK051773|Itgbl1|223272|integrin, beta-like 1	NM_145467|Itgbl1|223272|integrin, beta-like 1	BC020152|Itgbl1|223272|integrin, beta-like 1	AK029068|Itgbl1|223272|integrin, beta-like 1
mm9_v1_chr5_-_24606422_24606505	0.147242	HOX{A4,D4}.p2	AK154296|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_145401|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr3_-_146433200_146433208	0.147233	HOX{A4,D4}.p2	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr15_-_5058532_5058532	0.146149	HOX{A4,D4}.p2	NM_001163138|Card6|239319|caspase recruitment domain family, member 6
mm9_v1_chr6_+_113433507_113433615	0.145284	HOX{A4,D4}.p2	BC029065|Creld1|171508|cysteine-rich with EGF-like domains 1	AK155777|Creld1|171508|cysteine-rich with EGF-like domains 1	AB009020|Creld1|171508|cysteine-rich with EGF-like domains 1	BC010804|Creld1|171508|cysteine-rich with EGF-like domains 1	BC023893|Creld1|171508|cysteine-rich with EGF-like domains 1	NM_133930|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr13_-_40829082_40829191	0.144999	HOX{A4,D4}.p2	AB221578|Tcfap2a|21418|transcription factor AP-2, alpha	U17286|Tcfap2a|21418|transcription factor AP-2, alpha	AK145772|Tcfap2a|21418|transcription factor AP-2, alpha	X74216|Tcfap2a|21418|transcription factor AP-2, alpha	BC007471|Tcfap2a|21418|transcription factor AP-2, alpha	U17285|Tcfap2a|21418|transcription factor AP-2, alpha	NM_011547|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr8_-_87323958_87324038	0.14366	HOX{A4,D4}.p2	BC003766|Nfix|18032|nuclear factor I/X	Y07689|Nfix|18032|nuclear factor I/X
mm9_v1_chr17_-_26005680_26005704	0.141844	HOX{A4,D4}.p2	AK020614|Fam195a|68241|family with sequence similarity 195, member A	AK003564|Fam195a|68241|family with sequence similarity 195, member A	NM_026633|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr15_+_98538624_98538661	0.141737	HOX{A4,D4}.p2	AK077174|Ccdc65|105833|coiled-coil domain containing 65	BC048073|Ccdc65|105833|coiled-coil domain containing 65	AF454432|Ccdc65|105833|coiled-coil domain containing 65	NM_153518|Ccdc65|105833|coiled-coil domain containing 65	BC056947|Ccdc65|105833|coiled-coil domain containing 65	BC060155|Ccdc65|105833|coiled-coil domain containing 65
mm9_v1_chr11_+_20124648_20124793	0.141632	HOX{A4,D4}.p2	AK207850|Rab1|19324|RAB1, member RAS oncogene family	AK215283|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr10_-_88720534_88720534	0.141317	HOX{A4,D4}.p2	BC065114|Ano4|320091|anoctamin 4	NM_178773|Ano4|320091|anoctamin 4
mm9_v1_chr2_+_91898868_91898884	0.140909	HOX{A4,D4}.p2	
mm9_v1_chr11_+_82988687_82988701	0.140573	HOX{A4,D4}.p2	BC044865|Slfn4|20558|schlafen 4	NM_011410|Slfn4|20558|schlafen 4	AK137559|Slfn4|20558|schlafen 4	AK137689|Slfn4|20558|schlafen 4
mm9_v1_chr16_-_16504310_16504310	0.140316	HOX{A4,D4}.p2	AF402612|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139233|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr10_+_69667423_69667431	0.140147	HOX{A4,D4}.p2	AK009351|2310015B20Rik|69563|RIKEN cDNA 2310015B20 gene
mm9_v1_chr1_+_89967340_89967428	0.138988	HOX{A4,D4}.p2	NM_201644|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	AY227200|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	BC138699|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	BC146021|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	BC019434|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	L27122|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9	S57479|Ugt1a9|394434|UDP glucuronosyltransferase 1 family, polypeptide A9
mm9_v1_chr5_+_114830841_114830887	0.13837	HOX{A4,D4}.p2	BC023956|Ube3b|117146|ubiquitin protein ligase E3B
mm9_v1_chr4_-_40883509_40883654	0.138242	HOX{A4,D4}.p2	AK184952|Bag1|12017|BCL2-associated athanogene 1	AK213721|Bag1|12017|BCL2-associated athanogene 1	AK216811|Bag1|12017|BCL2-associated athanogene 1
mm9_v1_chr5_+_22988226_22988243	0.137996	HOX{A4,D4}.p2	
mm9_v1_chrM_+_5322_5396	0.137978	HOX{A4,D4}.p2	AK159262|COX1|17708|cytochrome c oxidase subunit I	AK136262|COX1|17708|cytochrome c oxidase subunit I	AK138996|COX1|17708|cytochrome c oxidase subunit I	AK142003|COX1|17708|cytochrome c oxidase subunit I	AK166684|COX1|17708|cytochrome c oxidase subunit I	AK166798|COX1|17708|cytochrome c oxidase subunit I	AK166978|COX1|17708|cytochrome c oxidase subunit I
mm9_v1_chr18_+_65048630_65048682	0.136708	HOX{A4,D4}.p2	AK042621|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr4_-_58219478_58219506	0.135132	HOX{A4,D4}.p2	AK035333|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	AK087058|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr8_-_42140113_42140147	0.134569	HOX{A4,D4}.p2	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr19_-_34952377_34952406	0.134107	HOX{A4,D4}.p2	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr2_+_163843744_163843775	0.13372	HOX{A4,D4}.p2	
mm9_v1_chr5_-_139960341_139960349	0.133431	HOX{A4,D4}.p2	AF224494|Zfand2a|100494|zinc finger, AN1-type domain 2A
mm9_v1_chr6_+_113433656_113433876	0.132894	HOX{A4,D4}.p2	BC025932|Creld1|171508|cysteine-rich with EGF-like domains 1	AK186017|Creld1|171508|cysteine-rich with EGF-like domains 1	AK195695|Creld1|171508|cysteine-rich with EGF-like domains 1	AK208544|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr4_-_9570742_9570800	0.132362	HOX{A4,D4}.p2	AF302655|Asph|65973|aspartate-beta-hydroxylase	AF302653|Asph|65973|aspartate-beta-hydroxylase	AK009170|Asph|65973|aspartate-beta-hydroxylase	BC128299|Asph|65973|aspartate-beta-hydroxylase	BC152365|Asph|65973|aspartate-beta-hydroxylase	AK028679|Asph|65973|aspartate-beta-hydroxylase	AK017453|Asph|65973|aspartate-beta-hydroxylase	AK014674|Asph|65973|aspartate-beta-hydroxylase	AK030694|Asph|65973|aspartate-beta-hydroxylase	AK009903|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr11_-_106642357_106642481	0.132183	HOX{A4,D4}.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr11_-_41996141_41996431	0.130567	HOX{A4,D4}.p2	AK141596|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	AK034095|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	NM_010250|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm9_v1_chr2_-_69180643_69180677	0.128465	HOX{A4,D4}.p2	AF133903|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11	AK144553|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11	NM_021022|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11
mm9_v1_chr9_+_94570310_94570389	0.127929	HOX{A4,D4}.p2	NM_177909|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK037058|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC153825|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC099942|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK172687|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK156494|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm9_v1_chr2_-_34769479_34769559	0.127646	HOX{A4,D4}.p2	BC027776|Phf19|74016|PHD finger protein 19	AK014380|Phf19|74016|PHD finger protein 19	NM_028716|Phf19|74016|PHD finger protein 19	AK014030|Phf19|74016|PHD finger protein 19
mm9_v1_chr17_-_34164996_34165023	0.126347	HOX{A4,D4}.p2	BC086927|H2-Ke6|14979|H2-K region expressed gene 6	NM_013543|H2-Ke6|14979|H2-K region expressed gene 6
mm9_v1_chr8_+_12984287_12984308	0.125674	HOX{A4,D4}.p2	AK147252|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr17_+_71168939_71168940	0.125221	HOX{A4,D4}.p2	AK034215|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chrX_+_20037652_20037652	0.124027	HOX{A4,D4}.p2	BC130270|Phf16|382207|PHD finger protein 16	NM_199317|Phf16|382207|PHD finger protein 16
mm9_v1_chr3_-_90193813_90193859	0.122152	HOX{A4,D4}.p2	BC141134|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	AK135190|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	AJ577573|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	NM_011988|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3	BC060052|Slc27a3|26568|solute carrier family 27 (fatty acid transporter), member 3
mm9_v1_chr13_-_69877709_69877899	0.121717	HOX{A4,D4}.p2	BC058543|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116979|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116981|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr9_-_115152895_115153139	0.121301	HOX{A4,D4}.p2	AK213927|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr4_-_58219559_58219619	0.121257	HOX{A4,D4}.p2	AK045217|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr2_-_91802081_91802083	0.12072	HOX{A4,D4}.p2	
mm9_v1_chr3_-_121518046_121518134	0.120064	HOX{A4,D4}.p2	BC054446|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK153298|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK004660|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK081952|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK144060|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	BC009119|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	NM_008991|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3
mm9_v1_chr10_-_127188787_127188853	0.119557	HOX{A4,D4}.p2	AK031480|Gpr182|11536|G protein-coupled receptor 182	NM_007412|Gpr182|11536|G protein-coupled receptor 182
mm9_v1_chr7_-_109166668_109166710	0.119243	HOX{A4,D4}.p2	AF122907|Il18bp|16068|interleukin 18 binding protein	NM_010531|Il18bp|16068|interleukin 18 binding protein	AK003370|Il18bp|16068|interleukin 18 binding protein
mm9_v1_chr11_-_79343891_79344047	0.118925	HOX{A4,D4}.p2	AK171332|Evi2a|14017|ecotropic viral integration site 2a	AK044098|Evi2a|14017|ecotropic viral integration site 2a	AK162958|Evi2a|14017|ecotropic viral integration site 2a	AK171594|Evi2a|14017|ecotropic viral integration site 2a	AK160302|Evi2a|14017|ecotropic viral integration site 2a	M34896|Evi2a|14017|ecotropic viral integration site 2a
mm9_v1_chr14_+_79826199_79826317	0.118892	HOX{A4,D4}.p2	AK135854|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	BC096019|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	NM_001024135|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7
mm9_v1_chr5_-_121459315_121459358	0.118885	HOX{A4,D4}.p2	D29965|Rph3a|19894|rabphilin 3A	AB112924|Rph3a|19894|rabphilin 3A
mm9_v1_chr4_-_41720928_41721082	0.118244	HOX{A4,D4}.p2	BC099574|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001164045|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001048179|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001164044|Ccl27a|20301|chemokine (C-C motif) ligand 27A
mm9_v1_chr10_+_98453513_98453709	0.117993	HOX{A4,D4}.p2	AK053569|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK042547|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr11_+_102977638_102977680	0.117268	HOX{A4,D4}.p2	AK134535|Hexim1|192231|hexamethylene bis-acetamide inducible 1	AY090614|Hexim1|192231|hexamethylene bis-acetamide inducible 1	NM_138753|Hexim1|192231|hexamethylene bis-acetamide inducible 1
mm9_v1_chr15_-_3253525_3253525	0.117105	HOX{A4,D4}.p2	NM_001166063|Ccdc152|100039139|coiled-coil domain containing 152
mm9_v1_chr5_+_115347505_115347613	0.116681	HOX{A4,D4}.p2	BC034361|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2	AK157649|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2	AK010034|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2	AK150492|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2
mm9_v1_chr19_+_8986136_8986196	0.116479	HOX{A4,D4}.p2	AK179326|Ganab|14376|alpha glucosidase 2 alpha neutral subunit
mm9_v1_chr2_-_155755998_155756045	0.116273	HOX{A4,D4}.p2	BC050884|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	BC057570|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK139488|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	NM_018888|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)
mm9_v1_chr19_+_12535268_12535270	0.115408	HOX{A4,D4}.p2	AK030216|Mpeg1|17476|macrophage expressed gene 1	NM_010821|Mpeg1|17476|macrophage expressed gene 1
mm9_v1_chr7_-_67285104_67285104	0.114817	HOX{A4,D4}.p2	NM_001082962|Snrpn|20646|small nuclear ribonucleoprotein N
mm9_v1_chr15_-_3929440_3929706	0.114718	HOX{A4,D4}.p2	BC036385|Fbxo4|106052|F-box protein 4	BC040086|Fbxo4|106052|F-box protein 4	NM_134099|Fbxo4|106052|F-box protein 4	AK015995|Fbxo4|106052|F-box protein 4
mm9_v1_chr19_+_54003803_54003809	0.114479	HOX{A4,D4}.p2	AK050175|Pdcd4|18569|programmed cell death 4
mm9_v1_chr6_+_88775664_88775919	0.114279	HOX{A4,D4}.p2	AK195256|Mgll|23945|monoglyceride lipase	AK199521|Mgll|23945|monoglyceride lipase	AK213425|Mgll|23945|monoglyceride lipase	AK185298|Mgll|23945|monoglyceride lipase	AK186020|Mgll|23945|monoglyceride lipase	AK190741|Mgll|23945|monoglyceride lipase	AK191234|Mgll|23945|monoglyceride lipase	AK191381|Mgll|23945|monoglyceride lipase	AK193146|Mgll|23945|monoglyceride lipase	AK194428|Mgll|23945|monoglyceride lipase	AK195163|Mgll|23945|monoglyceride lipase	AK195208|Mgll|23945|monoglyceride lipase	AK197913|Mgll|23945|monoglyceride lipase	AK198715|Mgll|23945|monoglyceride lipase	AK199057|Mgll|23945|monoglyceride lipase	AK200299|Mgll|23945|monoglyceride lipase	AK202265|Mgll|23945|monoglyceride lipase	AK202325|Mgll|23945|monoglyceride lipase	AK208993|Mgll|23945|monoglyceride lipase	AK214675|Mgll|23945|monoglyceride lipase	AK136867|Mgll|23945|monoglyceride lipase
mm9_v1_chr5_-_86539474_86539529	0.114022	HOX{A4,D4}.p2	AK017687|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr12_-_103057259_103057314	0.113209	HOX{A4,D4}.p2	AK090129|Fbln5|23876|fibulin 5	NM_011812|Fbln5|23876|fibulin 5	AF112151|Fbln5|23876|fibulin 5	AK157936|Fbln5|23876|fibulin 5	AK159960|Fbln5|23876|fibulin 5	AK159471|Fbln5|23876|fibulin 5
mm9_v1_chr2_-_181406313_181406348	0.11298	HOX{A4,D4}.p2	L35032|Sox18|20672|SRY-box containing gene 18	BC006612|Sox18|20672|SRY-box containing gene 18	AK144281|Sox18|20672|SRY-box containing gene 18	NM_009236|Sox18|20672|SRY-box containing gene 18
mm9_v1_chr4_-_44079664_44079905	0.112808	HOX{A4,D4}.p2	AK199019|Gne|50798|glucosamine	AJ132236|Gne|50798|glucosamine
mm9_v1_chr6_+_124254668_124254724	0.112182	HOX{A4,D4}.p2	NM_001170395|Cd163|93671|CD163 antigen	NM_053094|Cd163|93671|CD163 antigen	AF274883|Cd163|93671|CD163 antigen	BC144848|Cd163|93671|CD163 antigen	BC145793|Cd163|93671|CD163 antigen	DQ058616|Cd163|93671|CD163 antigen	DQ058617|Cd163|93671|CD163 antigen
mm9_v1_chr19_-_47165086_47165134	0.112005	HOX{A4,D4}.p2	AK008345|Usmg5|66477|upregulated during skeletal muscle growth 5	BC087919|Usmg5|66477|upregulated during skeletal muscle growth 5	NM_023211|Usmg5|66477|upregulated during skeletal muscle growth 5	AK038457|Usmg5|66477|upregulated during skeletal muscle growth 5	AJ290947|Usmg5|66477|upregulated during skeletal muscle growth 5	AK088856|Usmg5|66477|upregulated during skeletal muscle growth 5
mm9_v1_chr7_+_148586221_148586268	0.111843	HOX{A4,D4}.p2	U63159|Taldo1|21351|transaldolase 1
mm9_v1_chr3_+_32428382_32428415	0.111516	HOX{A4,D4}.p2	AK141611|Mfn1|67414|mitofusin 1	NM_024200|Mfn1|67414|mitofusin 1	AK018181|Mfn1|67414|mitofusin 1	AK220169|Mfn1|67414|mitofusin 1
mm9_v1_chr6_-_35258102_35258131	0.111066	HOX{A4,D4}.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr18_+_24796993_24796998	0.110827	HOX{A4,D4}.p2	AK213520|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)
mm9_v1_chr11_+_100442602_100442668	0.110755	HOX{A4,D4}.p2	AK190081|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK211066|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr5_+_64203602_64203733	0.110734	HOX{A4,D4}.p2	AK050792|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	AK002869|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	NM_029554|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr1_-_146096156_146096233	0.110152	HOX{A4,D4}.p2	BC052684|Rgs1|50778|regulator of G-protein signaling 1	AF215667|Rgs1|50778|regulator of G-protein signaling 1	BC028634|Rgs1|50778|regulator of G-protein signaling 1	AK154841|Rgs1|50778|regulator of G-protein signaling 1	AK170366|Rgs1|50778|regulator of G-protein signaling 1	AK089293|Rgs1|50778|regulator of G-protein signaling 1	AK138688|Rgs1|50778|regulator of G-protein signaling 1	AK154394|Rgs1|50778|regulator of G-protein signaling 1	AK170957|Rgs1|50778|regulator of G-protein signaling 1	AK171306|Rgs1|50778|regulator of G-protein signaling 1	NM_015811|Rgs1|50778|regulator of G-protein signaling 1
mm9_v1_chr5_+_24606757_24606800	0.109753	HOX{A4,D4}.p2	BC094288|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene	AK013483|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene	AK076604|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene
mm9_v1_chr1_-_72921438_72921462	0.109611	HOX{A4,D4}.p2	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr19_-_42160732_42160861	0.109469	HOX{A4,D4}.p2	AK180979|Morn4|226123|MORN repeat containing 4	AK214121|Morn4|226123|MORN repeat containing 4	BC023055|Morn4|226123|MORN repeat containing 4	AK159230|Morn4|226123|MORN repeat containing 4	AK154147|Morn4|226123|MORN repeat containing 4	NM_198108|Morn4|226123|MORN repeat containing 4
mm9_v1_chr11_+_67090625_67090855	0.10946	HOX{A4,D4}.p2	NM_177369|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021877|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021876|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	BC150737|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK029328|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK081482|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK087387|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AY963802|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021878|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal
mm9_v1_chr3_-_108059902_108059930	0.109421	HOX{A4,D4}.p2	AK005839|1700010K24Rik|75440|RIKEN cDNA 1700010K24 gene
mm9_v1_chr6_+_18816317_18816373	0.109184	HOX{A4,D4}.p2	BC049731|Ankrd7|75196|ankyrin repeat domain 7	NM_001167757|Ankrd7|75196|ankyrin repeat domain 7	NM_029202|Ankrd7|75196|ankyrin repeat domain 7	AK077080|Ankrd7|75196|ankyrin repeat domain 7	AK015948|Ankrd7|75196|ankyrin repeat domain 7
mm9_v1_chrY_-_622984_622997	0.109072	HOX{A4,D4}.p2	BC021453|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr10_+_5151833_5151833	0.10881	HOX{A4,D4}.p2	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr19_+_23240506_23240595	0.108274	HOX{A4,D4}.p2	AK187278|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr13_-_36826245_36826363	0.10825	HOX{A4,D4}.p2	AK161859|Nrn1|68404|neuritin 1	BC035531|Nrn1|68404|neuritin 1	NM_153529|Nrn1|68404|neuritin 1
mm9_v1_chr1_+_45390415_45390462	0.107868	HOX{A4,D4}.p2	BC039923|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr1_+_36818669_36818705	0.107674	HOX{A4,D4}.p2	AK089056|Zap70|22637|zeta-chain (TCR) associated protein kinase	BC029727|Zap70|22637|zeta-chain (TCR) associated protein kinase	U04379|Zap70|22637|zeta-chain (TCR) associated protein kinase	AK039883|Zap70|22637|zeta-chain (TCR) associated protein kinase	NM_009539|Zap70|22637|zeta-chain (TCR) associated protein kinase
mm9_v1_chr7_-_118214192_118214323	0.106969	HOX{A4,D4}.p2	AK037763|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr9_-_65402264_65402343	0.106727	HOX{A4,D4}.p2	
mm9_v1_chr8_-_3694155_3694179	0.106563	HOX{A4,D4}.p2	M99371|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK080159|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	M34163|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	NM_013517|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK156654|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK172591|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide
mm9_v1_chr5_-_91069499_91069680	0.106551	HOX{A4,D4}.p2	AK005472|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6	AK132288|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6	NM_028478|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6	BC031808|Rassf6|73246|Ras association (RalGDS/AF-6) domain family member 6
mm9_v1_chr14_-_80171003_80171120	0.106105	HOX{A4,D4}.p2	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chr15_-_77787128_77787170	0.105934	HOX{A4,D4}.p2	NM_001017983|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2	NM_001168260|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2
mm9_v1_chr2_+_119500777_119500991	0.105559	HOX{A4,D4}.p2	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr7_-_36539369_36539472	0.105291	HOX{A4,D4}.p2	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chrX_+_6154374_6154423	0.105062	HOX{A4,D4}.p2	AK052531|Shroom4|208431|shroom family member 4	AK173129|Shroom4|208431|shroom family member 4
mm9_v1_chr2_+_34729973_34730037	0.102529	HOX{A4,D4}.p2	AK021330|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	BC021771|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene
mm9_v1_chr4_-_69587193_69587277	0.101811	HOX{A4,D4}.p2	AK030082|Gm11223|100039888|stathmin 1 pseudogene
mm9_v1_chr3_+_90318850_90318869	0.101783	HOX{A4,D4}.p2	AK002755|S100a13|20196|S100 calcium binding protein A13	AK008895|S100a13|20196|S100 calcium binding protein A13
mm9_v1_chr2_-_167318313_167318390	0.101134	HOX{A4,D4}.p2	AK051741|Spata2|263876|spermatogenesis associated 2	AK144826|Spata2|263876|spermatogenesis associated 2	AK171240|Spata2|263876|spermatogenesis associated 2	AK171664|Spata2|263876|spermatogenesis associated 2	AK171852|Spata2|263876|spermatogenesis associated 2	BC034597|Spata2|263876|spermatogenesis associated 2	AK156188|Spata2|263876|spermatogenesis associated 2	AK170356|Spata2|263876|spermatogenesis associated 2	AK162743|Spata2|263876|spermatogenesis associated 2	NM_170756|Spata2|263876|spermatogenesis associated 2
mm9_v1_chr14_+_122506301_122506307	0.101045	HOX{A4,D4}.p2	AK075720|Tm9sf2|68059|transmembrane 9 superfamily member 2	NM_080556|Tm9sf2|68059|transmembrane 9 superfamily member 2
mm9_v1_chr4_+_108534484_108534486	0.100775	HOX{A4,D4}.p2	AK200396|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)
mm9_v1_chr9_-_109995405_109995533	0.100201	HOX{A4,D4}.p2	AK210185|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK212224|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr17_-_29052264_29052268	0.099768	HOX{A4,D4}.p2	BC117930|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	AK033585|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	NM_172450|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene
mm9_v1_chr9_+_20673178_20673179	0.099643	HOX{A4,D4}.p2	AK034516|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr11_-_121534350_121534391	0.0990352	HOX{A4,D4}.p2	BC088993|B3gntl1|210004|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	AK045461|B3gntl1|210004|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
mm9_v1_chr7_-_35098515_35098544	0.0985531	HOX{A4,D4}.p2	AK170198|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chr2_-_30683705_30683840	0.0984834	HOX{A4,D4}.p2	AY665653|Asb6|72323|ankyrin repeat and SOCS box-containing 6	AK088890|Asb6|72323|ankyrin repeat and SOCS box-containing 6	BC085485|Asb6|72323|ankyrin repeat and SOCS box-containing 6	BC019192|Asb6|72323|ankyrin repeat and SOCS box-containing 6	AK010909|Asb6|72323|ankyrin repeat and SOCS box-containing 6	AK049312|Asb6|72323|ankyrin repeat and SOCS box-containing 6	NM_133346|Asb6|72323|ankyrin repeat and SOCS box-containing 6
mm9_v1_chr10_+_23680299_23680380	0.0981564	HOX{A4,D4}.p2	NM_001008499|Taar4|209513|trace amine-associated receptor 4	BC117729|Taar4|209513|trace amine-associated receptor 4	BC117730|Taar4|209513|trace amine-associated receptor 4	AY255547|Taar4|209513|trace amine-associated receptor 4
mm9_v1_chr15_+_55083779_55083879	0.0979646	HOX{A4,D4}.p2	AK170208|Deptor|97998|DEP domain containing MTOR-interacting protein
mm9_v1_chr3_+_32335072_32335127	0.0976411	HOX{A4,D4}.p2	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr11_+_75565381_75565439	0.0972277	HOX{A4,D4}.p2	AX775993|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK192964|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK202856|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr5_+_136293975_136293975	0.0971459	HOX{A4,D4}.p2	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr12_-_91976586_91976877	0.0958687	HOX{A4,D4}.p2	AK032038|Dio2|13371|deiodinase, iodothyronine, type II	AK045607|Dio2|13371|deiodinase, iodothyronine, type II	AF177196|Dio2|13371|deiodinase, iodothyronine, type II	AF177197|Dio2|13371|deiodinase, iodothyronine, type II	AF093137|Dio2|13371|deiodinase, iodothyronine, type II	BC125383|Dio2|13371|deiodinase, iodothyronine, type II	BC125385|Dio2|13371|deiodinase, iodothyronine, type II	AF096875|Dio2|13371|deiodinase, iodothyronine, type II	NM_010050|Dio2|13371|deiodinase, iodothyronine, type II
mm9_v1_chr11_+_29641691_29641734	0.0958515	HOX{A4,D4}.p2	AK003859|Rtn4|68585|reticulon 4
mm9_v1_chr5_+_118292144_118292194	0.0956553	HOX{A4,D4}.p2	BC066101|Nos1|18125|nitric oxide synthase 1, neuronal	BC083183|Nos1|18125|nitric oxide synthase 1, neuronal
mm9_v1_chr7_+_30906952_30907031	0.0946517	HOX{A4,D4}.p2	NM_001081007|Zfp382|233060|zinc finger protein 382	AK134263|Zfp382|233060|zinc finger protein 382	BC151163|Zfp382|233060|zinc finger protein 382
mm9_v1_chr10_+_126602394_126602451	0.0944312	HOX{A4,D4}.p2	BC022180|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr6_-_113433154_113433156	0.0940619	HOX{A4,D4}.p2	AK033890|Il17rc|171095|interleukin 17 receptor C	AK040950|Il17rc|171095|interleukin 17 receptor C
mm9_v1_chr11_-_86509102_86509123	0.0935907	HOX{A4,D4}.p2	AK018633|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr16_+_88829238_88829254	0.0930046	HOX{A4,D4}.p2	AK132534|Krtap15|26560|keratin associated protein 15	NM_013713|Krtap15|26560|keratin associated protein 15	BC116219|Krtap15|26560|keratin associated protein 15
mm9_v1_chr5_-_129459236_129459360	0.0929979	HOX{A4,D4}.p2	NM_001081388|Rimbp2|231760|RIMS binding protein 2	AK044685|Rimbp2|231760|RIMS binding protein 2
mm9_v1_chr19_-_20465158_20465166	0.092943	HOX{A4,D4}.p2	AK167612|Anxa1|16952|annexin A1	AK171422|Anxa1|16952|annexin A1	NM_010730|Anxa1|16952|annexin A1	AK002681|Anxa1|16952|annexin A1	AK037064|Anxa1|16952|annexin A1	AK140838|Anxa1|16952|annexin A1	AK150564|Anxa1|16952|annexin A1	AK150718|Anxa1|16952|annexin A1	AK153156|Anxa1|16952|annexin A1	AK153490|Anxa1|16952|annexin A1	AK154568|Anxa1|16952|annexin A1	AK170612|Anxa1|16952|annexin A1	AK049455|Anxa1|16952|annexin A1
mm9_v1_chr2_+_69877182_69877182	0.0929233	HOX{A4,D4}.p2	NM_177376|Myo3b|329421|myosin IIIB
mm9_v1_chr3_+_88500529_88500661	0.0908773	HOX{A4,D4}.p2	AK193095|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene
mm9_v1_chr2_-_105228042_105228114	0.0897665	HOX{A4,D4}.p2	AK213156|Rcn1|19672|reticulocalbin 1
mm9_v1_chrM_+_5398_5404	0.0890158	HOX{A4,D4}.p2	
mm9_v1_chr6_+_60894310_60894310	0.0890111	HOX{A4,D4}.p2	NM_001163507|Mmrn1|70945|multimerin 1	NM_027613|Mmrn1|70945|multimerin 1
mm9_v1_chr2_-_120365581_120365597	0.0884494	HOX{A4,D4}.p2	U59739|Zfp106|20402|zinc finger protein 106
mm9_v1_chrM_+_9875_9905	0.0881819	HOX{A4,D4}.p2	AK140187|ND4L|17720|NADH dehydrogenase subunit 4L	AK157367|ND4L|17720|NADH dehydrogenase subunit 4L	AK144853|ND4L|17720|NADH dehydrogenase subunit 4L	AK153747|ND4L|17720|NADH dehydrogenase subunit 4L
mm9_v1_chr13_-_100286446_100286519	0.0879657	HOX{A4,D4}.p2	BC019183|Mtap1b|17755|microtubule-associated protein 1B	BC046287|Mtap1b|17755|microtubule-associated protein 1B	BC052016|Mtap1b|17755|microtubule-associated protein 1B	BC078457|Mtap1b|17755|microtubule-associated protein 1B	BC138033|Mtap1b|17755|microtubule-associated protein 1B	BC138034|Mtap1b|17755|microtubule-associated protein 1B	BC037105|Mtap1b|17755|microtubule-associated protein 1B	X51396|Mtap1b|17755|microtubule-associated protein 1B	AK158307|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr19_+_30020236_30020283	0.0871352	HOX{A4,D4}.p2	AK075849|Il33|77125|interleukin 33	NM_001164724|Il33|77125|interleukin 33
mm9_v1_chr6_+_134961654_134961711	0.0869065	HOX{A4,D4}.p2	
mm9_v1_chr5_-_131783942_131783957	0.0861848	HOX{A4,D4}.p2	AK087726|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)
mm9_v1_chr7_+_114179649_114179650	0.0854425	HOX{A4,D4}.p2	NM_147034|Olfr713|259036|olfactory receptor 713	BC100704|Olfr713|259036|olfactory receptor 713
mm9_v1_chr3_+_89866717_89866721	0.0853008	HOX{A4,D4}.p2	AK007060|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene	NM_028567|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene	BC048560|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene
mm9_v1_chr12_+_101447413_101447431	0.0850041	HOX{A4,D4}.p2	BC048752|Calm1|12313|calmodulin 1
mm9_v1_chr7_-_34926107_34926132	0.0848914	HOX{A4,D4}.p2	AK218279|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK208593|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr8_+_74676404_74676467	0.0846162	HOX{A4,D4}.p2	AK205532|Tpm4|326618|tropomyosin 4	AK207661|Tpm4|326618|tropomyosin 4
mm9_v1_chrX_+_20265093_20265121	0.0844453	HOX{A4,D4}.p2	AK166188|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr3_+_136460712_136460798	0.0844436	HOX{A4,D4}.p2	AK209023|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr11_-_3404756_3404831	0.0841748	HOX{A4,D4}.p2	BC022915|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK171029|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK170114|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC051452|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK165718|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK136908|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC131635|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC131634|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK034272|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	NM_172439|Inpp5j|170835|inositol polyphosphate 5-phosphatase J
mm9_v1_chrX_-_57400778_57400876	0.0835653	HOX{A4,D4}.p2	BC125435|Mcf2|109904|mcf.2 transforming sequence	AB052945|Mcf2|109904|mcf.2 transforming sequence	AB101616|Mcf2|109904|mcf.2 transforming sequence	NM_133197|Mcf2|109904|mcf.2 transforming sequence	AK032122|Mcf2|109904|mcf.2 transforming sequence
mm9_v1_chr8_+_46744023_46744252	0.0833617	HOX{A4,D4}.p2	AK079130|Sorbs2|234214|sorbin and SH3 domain containing 2	AK140498|Sorbs2|234214|sorbin and SH3 domain containing 2	AK050951|Sorbs2|234214|sorbin and SH3 domain containing 2	BC039163|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr4_-_134409254_134409295	0.0829141	HOX{A4,D4}.p2	AY846873|Tmem57|66146|transmembrane protein 57	AY846874|Tmem57|66146|transmembrane protein 57	NM_025382|Tmem57|66146|transmembrane protein 57
mm9_v1_chr19_-_8788307_8788398	0.0824641	HOX{A4,D4}.p2	X14309|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AB023408|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	U25708|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	BC065173|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK090046|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK165550|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK165417|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	NM_008577|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
mm9_v1_chr8_-_108462291_108462291	0.0821104	HOX{A4,D4}.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr1_+_174048400_174048426	0.0809819	HOX{A4,D4}.p2	BC005609|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr5_+_89012547_89012592	0.0806598	HOX{A4,D4}.p2	AK018184|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chrX_+_38754568_38754592	0.0798368	HOX{A4,D4}.p2	AK138615|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr1_+_5073161_5073324	0.0796654	HOX{A4,D4}.p2	AK151659|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK034165|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK135137|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK152147|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK081492|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	BC009154|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK078767|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	NM_133826|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H
mm9_v1_chr5_+_30559138_30559249	0.0796203	HOX{A4,D4}.p2	NM_027652|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040494|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK079325|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK083973|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK140416|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC106097|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK048011|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK014530|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC115783|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC117551|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK122544|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040745|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm9_v1_chr11_-_115940157_115940300	0.0796011	HOX{A4,D4}.p2	
mm9_v1_chr8_+_28164658_28164830	0.0792462	HOX{A4,D4}.p2	AK219818|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr6_-_131197295_131197381	0.0789766	HOX{A4,D4}.p2	U10304|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	AK017140|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	BC064711|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	NM_001170851|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2	NM_008462|Klra2|16633|killer cell lectin-like receptor, subfamily A, member 2
mm9_v1_chr11_-_120012520_120012596	0.0786751	HOX{A4,D4}.p2	AK007977|Slc38a10|72055|solute carrier family 38, member 10	AK084120|Slc38a10|72055|solute carrier family 38, member 10	AK032245|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr2_-_120796395_120796492	0.0785964	HOX{A4,D4}.p2	AF061555|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1	NM_009461|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1
mm9_v1_chr9_+_108844100_108844145	0.0785384	HOX{A4,D4}.p2	
mm9_v1_chr4_+_150302107_150302108	0.078519	HOX{A4,D4}.p2	NM_001077509|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9	AK154625|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9
mm9_v1_chr9_-_65732822_65732840	0.0783251	HOX{A4,D4}.p2	AF197574|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr17_-_36179615_36179686	0.0783225	HOX{A4,D4}.p2	M35243|H2-T22|15039|histocompatibility 2, T region locus 22	M35247|H2-T22|15039|histocompatibility 2, T region locus 22	BC003819|H2-T22|15039|histocompatibility 2, T region locus 22	M35248|H2-T9|15051|histocompatibility 2, T region locus 9	NM_010399|H2-T9|15051|histocompatibility 2, T region locus 9	AK161744|H2-T22|15039|histocompatibility 2, T region locus 22	M35245|H2-T22|15039|histocompatibility 2, T region locus 22	NM_010397|H2-T22|15039|histocompatibility 2, T region locus 22	AK162874|H2-T22|15039|histocompatibility 2, T region locus 22	AK133985|H2-T22|15039|histocompatibility 2, T region locus 22
mm9_v1_chr2_-_35835311_35835317	0.0781312	HOX{A4,D4}.p2	AK016881|Ttll11|74410|tubulin tyrosine ligase-like family, member 11
mm9_v1_chr16_-_95680627_95680683	0.0779968	HOX{A4,D4}.p2	
mm9_v1_chr5_+_33369240_33369358	0.0778522	HOX{A4,D4}.p2	AK217599|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr14_+_120705667_120705677	0.0778419	HOX{A4,D4}.p2	AK153261|Mbnl2|105559|muscleblind-like 2	AK167694|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr12_+_96930429_96930467	0.0772923	HOX{A4,D4}.p2	AK135149|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	NM_201518|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK136973|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC067058|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK041311|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC096471|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr9_+_121643763_121643808	0.0767857	HOX{A4,D4}.p2	AK052484|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr7_-_93924317_93924373	0.0761934	HOX{A4,D4}.p2	BC119604|Folh1|53320|folate hydrolase	BC119605|Folh1|53320|folate hydrolase	AK002920|Folh1|53320|folate hydrolase	AF026380|Folh1|53320|folate hydrolase	AK090289|Folh1|53320|folate hydrolase	NM_001159706|Folh1|53320|folate hydrolase	NM_016770|Folh1|53320|folate hydrolase
mm9_v1_chr5_-_87997908_87998005	0.0760347	HOX{A4,D4}.p2	AF026073|Sult1d1|53315|sulfotransferase family 1D, member 1	AK133530|Sult1d1|53315|sulfotransferase family 1D, member 1	U32371|Sult1d1|53315|sulfotransferase family 1D, member 1	BC066190|Sult1d1|53315|sulfotransferase family 1D, member 1	BC010752|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr7_+_139158204_139158284	0.0756888	HOX{A4,D4}.p2	BC119380|Gpr26|233919|G protein-coupled receptor 26	BC120647|Gpr26|233919|G protein-coupled receptor 26
mm9_v1_chr12_-_102137614_102137733	0.0754869	HOX{A4,D4}.p2	AK154292|Gm10431|100038679|predicted gene 10431	NM_001177674|Gpr68|238377|G protein-coupled receptor 68
mm9_v1_chr2_-_144353032_144353084	0.0746517	HOX{A4,D4}.p2	BC141156|6330439K17Rik|241688|RIKEN cDNA 6330439K17 gene	BC145464|6330439K17Rik|241688|RIKEN cDNA 6330439K17 gene
mm9_v1_chr11_+_23978110_23978267	0.0746502	HOX{A4,D4}.p2	AK140949|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF051525|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF169036|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF169037|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK122557|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF186018|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK004395|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK043677|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	BC051418|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)
mm9_v1_chr7_-_87857062_87857123	0.0745768	HOX{A4,D4}.p2	
mm9_v1_chr4_+_95246111_95246193	0.0735197	HOX{A4,D4}.p2	NM_029347|Fggy|75578|FGGY carbohydrate kinase domain containing	AK085534|Fggy|75578|FGGY carbohydrate kinase domain containing	BC031708|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr2_-_105227142_105227176	0.0734447	HOX{A4,D4}.p2	BC051551|Rcn1|19672|reticulocalbin 1
mm9_v1_chr11_-_53097625_53097670	0.0731667	HOX{A4,D4}.p2	AK179174|Hspa4|15525|heat shock protein 4
mm9_v1_chr11_+_95353403_95353542	0.0720144	HOX{A4,D4}.p2	
mm9_v1_chr4_-_116314542_116314556	0.071842	HOX{A4,D4}.p2	AK178751|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK203039|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr3_-_109946095_109946180	0.0713832	HOX{A4,D4}.p2	AB038667|Ntng1|80883|netrin G1	AK173075|Ntng1|80883|netrin G1
mm9_v1_chr2_-_120346171_120346284	0.0713617	HOX{A4,D4}.p2	AF060245|Zfp106|20402|zinc finger protein 106	AK029313|Zfp106|20402|zinc finger protein 106
mm9_v1_chr7_+_18398030_18398100	0.0713119	HOX{A4,D4}.p2	AK005390|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	AK005482|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	AK005509|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	AK005533|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	NM_025957|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14	BC099412|Ceacam14|67084|carcinoembryonic antigen-related cell adhesion molecule 14
mm9_v1_chr12_+_110884340_110884400	0.0711546	HOX{A4,D4}.p2	AF498294|Rian|75745|RNA imprinted and accumulated in nucleus	AB063319|Rian|75745|RNA imprinted and accumulated in nucleus	AK017440|Rian|75745|RNA imprinted and accumulated in nucleus
mm9_v1_chr7_+_9080031_9080031	0.0711301	HOX{A4,D4}.p2	NM_001105070|Vmn2r38|434110|vomeronasal 2, receptor 38
mm9_v1_chrM_+_5462_5556	0.0708823	HOX{A4,D4}.p2	
mm9_v1_chr5_+_31167731_31167889	0.0706502	HOX{A4,D4}.p2	AK210919|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr8_+_119619761_119619897	0.0704432	HOX{A4,D4}.p2	AF294899|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	AJ278064|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	NM_001163028|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	NM_021486|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	AK146472|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC125328|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC125330|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC145036|Bcmo1|63857|beta-carotene 15,15'-monooxygenase
mm9_v1_chr4_+_128365981_128366038	0.0703829	HOX{A4,D4}.p2	NM_018774|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC057571|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr8_+_67471046_67471202	0.0698635	HOX{A4,D4}.p2	AK013998|Tmem192|73067|transmembrane protein 192	NM_001163747|Tmem192|73067|transmembrane protein 192	NM_028427|Tmem192|73067|transmembrane protein 192	AK168146|Tmem192|73067|transmembrane protein 192	AK046181|Tmem192|73067|transmembrane protein 192	AK132619|Tmem192|73067|transmembrane protein 192	BC020157|Tmem192|73067|transmembrane protein 192
mm9_v1_chr17_-_7152972_7153124	0.0684869	HOX{A4,D4}.p2	BC110284|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chrM_+_7714_7790	0.0681219	HOX{A4,D4}.p2	AF093677|ATP6|17705|ATP synthase F0 subunit 6	BC069931|Gm10925|100191075|predicted gene 10925
mm9_v1_chrM_-_13886_13905	0.0676507	HOX{A4,D4}.p2	
mm9_v1_chr1_+_89991575_89991689	0.067393	HOX{A4,D4}.p2	NM_201642|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK159496|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK128918|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK162317|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK165465|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK154973|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	BC141205|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	BC141206|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AY227199|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK144599|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK153157|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C
mm9_v1_chr4_+_135750199_135750281	0.066455	HOX{A4,D4}.p2	
mm9_v1_chr19_+_21346734_21346785	0.0660911	HOX{A4,D4}.p2	AK018054|Zfand5|22682|zinc finger, AN1-type domain 5	AK076397|Zfand5|22682|zinc finger, AN1-type domain 5	BC119124|Zfand5|22682|zinc finger, AN1-type domain 5	BC119126|Zfand5|22682|zinc finger, AN1-type domain 5	NM_009551|Zfand5|22682|zinc finger, AN1-type domain 5	AK131911|Zfand5|22682|zinc finger, AN1-type domain 5	BC080270|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr17_+_56301899_56301970	0.0657434	HOX{A4,D4}.p2	AK090348|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	NM_025566|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK150678|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK153177|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK011245|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK136962|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1
mm9_v1_chr15_+_99236350_99236367	0.0657183	HOX{A4,D4}.p2	AK206236|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr11_-_69615126_69615217	0.0653566	HOX{A4,D4}.p2	NM_010198|Fgf11|14166|fibroblast growth factor 11	U66203|Fgf11|14166|fibroblast growth factor 11	BC066859|Fgf11|14166|fibroblast growth factor 11
mm9_v1_chr4_-_118951578_118951709	0.0648593	HOX{A4,D4}.p2	AK213628|Ybx1|22608|Y box protein 1	AK181881|Ybx1|22608|Y box protein 1	AK197905|Ybx1|22608|Y box protein 1
mm9_v1_chr5_-_24781987_24782111	0.0645276	HOX{A4,D4}.p2	AK077567|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr18_+_34475207_34475256	0.0643757	HOX{A4,D4}.p2	AK142170|Apc|11789|adenomatosis polyposis coli
mm9_v1_chrX_+_71415963_71415984	0.0642603	HOX{A4,D4}.p2	
mm9_v1_chr15_+_3224767_3224812	0.0639766	HOX{A4,D4}.p2	AK190911|Sepp1|20363|selenoprotein P, plasma, 1	AK192055|Sepp1|20363|selenoprotein P, plasma, 1	AK192611|Sepp1|20363|selenoprotein P, plasma, 1	AK193239|Sepp1|20363|selenoprotein P, plasma, 1	AK193304|Sepp1|20363|selenoprotein P, plasma, 1	AK193589|Sepp1|20363|selenoprotein P, plasma, 1	AK196001|Sepp1|20363|selenoprotein P, plasma, 1	AK199796|Sepp1|20363|selenoprotein P, plasma, 1	AK200678|Sepp1|20363|selenoprotein P, plasma, 1	AK201439|Sepp1|20363|selenoprotein P, plasma, 1	AK201752|Sepp1|20363|selenoprotein P, plasma, 1	AK202422|Sepp1|20363|selenoprotein P, plasma, 1	AK203751|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr6_+_113433408_113433466	0.0638668	HOX{A4,D4}.p2	AK042344|Creld1|171508|cysteine-rich with EGF-like domains 1	AK077726|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr13_-_114453813_114453883	0.0626883	HOX{A4,D4}.p2	BC092376|Hspb3|56534|heat shock protein 3	AF203375|Hspb3|56534|heat shock protein 3	BC065388|Hspb3|56534|heat shock protein 3	AK009633|Hspb3|56534|heat shock protein 3	NM_019960|Hspb3|56534|heat shock protein 3
mm9_v1_chr14_+_66915902_66915902	0.0624828	HOX{A4,D4}.p2	AK003000|Trim35|66854|tripartite motif-containing 35	AK020775|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr19_-_16342088_16342126	0.0621087	HOX{A4,D4}.p2	
mm9_v1_chr6_+_124654080_124654110	0.0619959	HOX{A4,D4}.p2	AK194975|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3
mm9_v1_chr16_-_30388858_30388938	0.0618523	HOX{A4,D4}.p2	
mm9_v1_chr8_+_97197870_97198051	0.0613829	HOX{A4,D4}.p2	AK185594|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK195499|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205549|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK207967|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK212239|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK214075|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK216087|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK218146|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK220110|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK206178|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK190102|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205025|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK005851|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr7_-_15031917_15031936	0.0597041	HOX{A4,D4}.p2	EU486167|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK041070|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	NM_175250|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	EU486166|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr13_+_54203236_54203344	0.059604	HOX{A4,D4}.p2	AK048238|Sfxn1|14057|sideroflexin 1
mm9_v1_chr17_+_21097558_21097582	0.0593204	HOX{A4,D4}.p2	AK180835|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	AK186399|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr5_-_149995789_149995819	0.0585516	HOX{A4,D4}.p2	AK017599|5730422E09Rik|433966|RIKEN cDNA 5730422E09 gene
mm9_v1_chr8_+_108703001_108703015	0.0582265	HOX{A4,D4}.p2	BC038404|Slc7a6|330836|solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
mm9_v1_chr1_-_164867355_164867355	0.0576372	HOX{A4,D4}.p2	NM_001178038|Fmo6|226565|flavin containing monooxygenase 6
mm9_v1_chr11_+_89892027_89892040	0.0575124	HOX{A4,D4}.p2	AK003574|Tmem100|67888|transmembrane protein 100	AK033406|Tmem100|67888|transmembrane protein 100
mm9_v1_chr15_+_6395353_6395370	0.0566637	HOX{A4,D4}.p2	X05475|C9|12279|complement component 9
mm9_v1_chr8_-_95572090_95572178	0.055888	HOX{A4,D4}.p2	BC089371|Ces1a|244595|carboxylesterase 1A	NM_001013764|Ces1a|244595|carboxylesterase 1A
mm9_v1_chr2_+_80478960_80478972	0.0553803	HOX{A4,D4}.p2	NM_027091|Nup35|69482|nucleoporin 35	AK089997|Nup35|69482|nucleoporin 35
mm9_v1_chr17_-_27717231_27717234	0.0553576	HOX{A4,D4}.p2	AK178513|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm9_v1_chr6_+_123073408_123073506	0.055271	HOX{A4,D4}.p2	AK049002|Clec4a2|26888|C-type lectin domain family 4, member a2	BC006623|Clec4a2|26888|C-type lectin domain family 4, member a2	BC075729|Clec4a2|26888|C-type lectin domain family 4, member a2
mm9_v1_chr1_-_178143971_178144072	0.0551796	HOX{A4,D4}.p2	AK082725|Pld5|319455|phospholipase D family, member 5	NM_001195816|Pld5|319455|phospholipase D family, member 5
mm9_v1_chr15_+_10106992_10106998	0.0548856	HOX{A4,D4}.p2	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr11_-_70482778_70482812	0.0547973	HOX{A4,D4}.p2	BC046751|Spag7|216873|sperm associated antigen 7	BC055821|Spag7|216873|sperm associated antigen 7	AK077543|Spag7|216873|sperm associated antigen 7	AK042294|Spag7|216873|sperm associated antigen 7	AK166184|Spag7|216873|sperm associated antigen 7
mm9_v1_chr5_+_125935187_125935312	0.0541417	HOX{A4,D4}.p2	
mm9_v1_chr11_+_92961160_92961203	0.0537312	HOX{A4,D4}.p2	AK038512|Car10|72605|carbonic anhydrase 10
mm9_v1_chr7_-_109907908_109907984	0.0536143	HOX{A4,D4}.p2	AK014616|Olfr78|170639|olfactory receptor 78	AK028467|Olfr78|170639|olfactory receptor 78	AK036356|Olfr78|170639|olfactory receptor 78	NM_001168503|Olfr78|170639|olfactory receptor 78	NM_130866|Olfr78|170639|olfactory receptor 78
mm9_v1_chr5_-_23012407_23012525	0.0534605	HOX{A4,D4}.p2	AK044922|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK201776|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr2_-_87990239_87990239	0.0531933	HOX{A4,D4}.p2	BC119292|Olfr1167|258291|olfactory receptor 1167	BC137817|Olfr1167|258291|olfactory receptor 1167	NM_146294|Olfr1167|258291|olfactory receptor 1167
mm9_v1_chr7_-_52894111_52894127	0.0530511	HOX{A4,D4}.p2	AK003910|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK049852|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK037147|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene
mm9_v1_chr2_+_24935818_24936028	0.0530306	HOX{A4,D4}.p2	BC031143|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	NM_028093|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AY364442|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AK008590|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8
mm9_v1_chr9_-_7835107_7835268	0.0528471	HOX{A4,D4}.p2	BC145985|Birc2|11797|baculoviral IAP repeat-containing 2	NM_007465|Birc2|11797|baculoviral IAP repeat-containing 2	U88909|Birc2|11797|baculoviral IAP repeat-containing 2	BC033480|Birc2|11797|baculoviral IAP repeat-containing 2
mm9_v1_chr3_+_123058707_123058740	0.052649	HOX{A4,D4}.p2	AK009425|Sec24d|69608|Sec24 related gene family, member D (S. cerevisiae)
mm9_v1_chr1_+_173433608_173433701	0.0525929	HOX{A4,D4}.p2	AK048243|Refbp2|56009|RNA and export factor binding protein 2	NM_019484|Refbp2|56009|RNA and export factor binding protein 2	BC099405|Refbp2|56009|RNA and export factor binding protein 2
mm9_v1_chr6_+_73221007_73221091	0.0524721	HOX{A4,D4}.p2	AK204482|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr1_+_24184448_24184693	0.0523331	HOX{A4,D4}.p2	NM_007740|Col9a1|12839|collagen, type IX, alpha 1	AK031071|Col9a1|12839|collagen, type IX, alpha 1	D17511|Col9a1|12839|collagen, type IX, alpha 1	BC046970|Col9a1|12839|collagen, type IX, alpha 1	L12215|Col9a1|12839|collagen, type IX, alpha 1
mm9_v1_chr12_+_50484907_50484951	0.052208	HOX{A4,D4}.p2	BC064449|Foxg1|15228|forkhead box G1
mm9_v1_chr4_-_134081867_134082196	0.0519139	HOX{A4,D4}.p2	AK196748|Fam54b|76824|family with sequence similarity 54, member B	AK205711|Fam54b|76824|family with sequence similarity 54, member B	AK194688|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr6_+_91706816_91706893	0.0517524	HOX{A4,D4}.p2	AK165837|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm9_v1_chrX_-_163768423_163768472	0.0516567	HOX{A4,D4}.p2	AF334943|Tlr7|170743|toll-like receptor 7	AF334942|Tlr7|170743|toll-like receptor 7	AK036549|Tlr7|170743|toll-like receptor 7	AK154906|Tlr7|170743|toll-like receptor 7	NM_133211|Tlr7|170743|toll-like receptor 7	AK156908|Tlr7|170743|toll-like receptor 7
mm9_v1_chr16_-_98169926_98169967	0.0506153	HOX{A4,D4}.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr1_-_74982118_74982188	0.0505225	HOX{A4,D4}.p2	BC150939|Ccdc108|241116|coiled-coil domain containing 108	AK038623|Ccdc108|241116|coiled-coil domain containing 108	AK046272|Ccdc108|241116|coiled-coil domain containing 108	AK133278|Ccdc108|241116|coiled-coil domain containing 108	NM_001039495|Ccdc108|241116|coiled-coil domain containing 108
mm9_v1_chr19_+_8907691_8907773	0.0505089	HOX{A4,D4}.p2	AK004010|Hnrnpul2|68693|heterogeneous nuclear ribonucleoprotein U-like 2
mm9_v1_chr3_-_108707417_108707441	0.0504887	HOX{A4,D4}.p2	AK007374|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm9_v1_chr13_-_21494493_21494508	0.050468	HOX{A4,D4}.p2	AK220177|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3
mm9_v1_chr6_-_87740264_87740322	0.0496701	HOX{A4,D4}.p2	AK050098|Rab43|69834|RAB43, member RAS oncogene family
mm9_v1_chr14_+_66915903_66915912	0.0492053	HOX{A4,D4}.p2	AK031803|Trim35|66854|tripartite motif-containing 35	BC049105|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr7_+_87343308_87343334	0.0491983	HOX{A4,D4}.p2	AK134973|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr6_+_50150160_50150179	0.0491936	HOX{A4,D4}.p2	AK047380|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm9_v1_chr18_+_74442753_74442835	0.0489227	HOX{A4,D4}.p2	NM_028948|Ccdc11|74453|coiled-coil domain containing 11	AK016821|Ccdc11|74453|coiled-coil domain containing 11	AK162352|Ccdc11|74453|coiled-coil domain containing 11	BC099500|Ccdc11|74453|coiled-coil domain containing 11
mm9_v1_chr15_+_99240353_99240379	0.0488527	HOX{A4,D4}.p2	
mm9_v1_chr1_-_82232392_82232507	0.0486895	HOX{A4,D4}.p2	AK141842|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr19_-_37250472_37250552	0.0484675	HOX{A4,D4}.p2	AK147243|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr6_+_30758582_30758676	0.0481476	HOX{A4,D4}.p2	AK014219|Copg2as2|100044236|coatomer protein complex, subunit gamma 2, antisense 2
mm9_v1_chr6_+_21899614_21899692	0.0481364	HOX{A4,D4}.p2	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr5_-_17341534_17341556	0.0478537	HOX{A4,D4}.p2	L23108|Cd36|12491|CD36 antigen	AK151355|Cd36|12491|CD36 antigen
mm9_v1_chr10_+_53057491_53057558	0.0474789	HOX{A4,D4}.p2	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr1_+_82721562_82721635	0.0470764	HOX{A4,D4}.p2	AK217444|Mff|75734|mitochondrial fission factor	AK218934|Mff|75734|mitochondrial fission factor
mm9_v1_chr9_-_29219306_29219337	0.0467815	HOX{A4,D4}.p2	AF282980|Ntm|235106|neurotrimin	BC023307|Ntm|235106|neurotrimin
mm9_v1_chrX_+_38754480_38754557	0.0466217	HOX{A4,D4}.p2	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr6_+_47827535_47827591	0.0462448	HOX{A4,D4}.p2	NM_146175|Zfp282|101095|zinc finger protein 282	AK088531|Zfp282|101095|zinc finger protein 282	AK148038|Zfp282|101095|zinc finger protein 282
mm9_v1_chrX_-_100381703_100381961	0.0460564	HOX{A4,D4}.p2	BC115708|Nap1l2|17954|nucleosome assembly protein 1-like 2	BC115761|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK051439|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK131621|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK077430|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr9_-_64062342_64062398	0.0457907	HOX{A4,D4}.p2	AK165664|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr12_+_85702978_85703016	0.0457245	HOX{A4,D4}.p2	BC106183|Coq6|217707|coenzyme Q6 homolog (yeast)	AK167380|Coq6|217707|coenzyme Q6 homolog (yeast)	AK170311|Coq6|217707|coenzyme Q6 homolog (yeast)	AK077863|Coq6|217707|coenzyme Q6 homolog (yeast)	BC051055|Coq6|217707|coenzyme Q6 homolog (yeast)	BC024135|Coq6|217707|coenzyme Q6 homolog (yeast)
mm9_v1_chr16_-_38445988_38446143	0.0456562	HOX{A4,D4}.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr2_+_130250035_130250123	0.0456061	HOX{A4,D4}.p2	NM_030559|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK169694|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK162984|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK049872|Vps16|80743|vacuolar protein sorting 16 (yeast)	AB056721|Vps16|80743|vacuolar protein sorting 16 (yeast)
mm9_v1_chr17_+_35263978_35264059	0.0453086	HOX{A4,D4}.p2	BC138707|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	BC138708|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	NM_033477|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E
mm9_v1_chr18_-_75857207_75857349	0.0453048	HOX{A4,D4}.p2	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr1_-_164796660_164796743	0.0450219	HOX{A4,D4}.p2	BC011229|Fmo1|14261|flavin containing monooxygenase 1	NM_010231|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr11_+_78059210_78059318	0.0449305	HOX{A4,D4}.p2	BC058798|Sdf2|20316|stromal cell derived factor 2	NM_009143|Sdf2|20316|stromal cell derived factor 2
mm9_v1_chr14_-_102008407_102008407	0.0447239	HOX{A4,D4}.p2	AK039337|Tbc1d4|210789|TBC1 domain family, member 4	NM_001081278|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr16_-_36666078_36666195	0.0446432	HOX{A4,D4}.p2	AF065897|Cd86|12524|CD86 antigen	AF065898|Cd86|12524|CD86 antigen	AF065899|Cd86|12524|CD86 antigen	AF065900|Cd86|12524|CD86 antigen	S70108|Cd86|12524|CD86 antigen	BC013807|Cd86|12524|CD86 antigen	L25606|Cd86|12524|CD86 antigen	AK079513|Cd86|12524|CD86 antigen	AK155710|Cd86|12524|CD86 antigen	AK170054|Cd86|12524|CD86 antigen	NM_019388|Cd86|12524|CD86 antigen	AK172548|Cd86|12524|CD86 antigen	AK172686|Cd86|12524|CD86 antigen
mm9_v1_chr9_-_14587400_14587407	0.0446049	HOX{A4,D4}.p2	BC020398|Ankrd49|56503|ankyrin repeat domain 49	BC019777|Ankrd49|56503|ankyrin repeat domain 49	NM_019683|Ankrd49|56503|ankyrin repeat domain 49
mm9_v1_chr6_+_54766562_54766917	0.0444293	HOX{A4,D4}.p2	AF513708|Znrf2|387524|zinc and ring finger 2	NM_199143|Znrf2|387524|zinc and ring finger 2	BC104316|Znrf2|387524|zinc and ring finger 2	BC104317|Znrf2|387524|zinc and ring finger 2	BC125242|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr18_+_52928026_52928056	0.0441845	HOX{A4,D4}.p2	AK042895|Gm5078|320291|predicted gene 5078	AK016941|Sncaip|67847|synuclein, alpha interacting protein (synphilin)
mm9_v1_chr15_+_101097276_101097334	0.0439303	HOX{A4,D4}.p2	AK157203|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	NM_010444|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	AK004709|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	J04113|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	BC004770|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	X60132|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1
mm9_v1_chr7_-_111233591_111233690	0.0434797	HOX{A4,D4}.p2	NM_207144|Olfr645|258247|olfactory receptor 645	BC132009|Olfr645|258247|olfactory receptor 645	BC132011|Olfr645|258247|olfactory receptor 645
mm9_v1_chr17_+_70871393_70871416	0.0426345	HOX{A4,D4}.p2	AK036307|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr8_-_28524173_28524415	0.0424732	HOX{A4,D4}.p2	AY574265|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AJ245706|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AK149262|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	BC031985|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	NM_021369|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6
mm9_v1_chr9_+_5298516_5298702	0.0421323	HOX{A4,D4}.p2	BC008152|Casp1|12362|caspase 1	NM_009807|Casp1|12362|caspase 1	L28095|Casp1|12362|caspase 1	AK132826|Casp1|12362|caspase 1	AK163069|Casp1|12362|caspase 1
mm9_v1_chrX_+_69062091_69062188	0.0414239	HOX{A4,D4}.p2	NM_001081356|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049488|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK138582|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK011632|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK008848|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK045401|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK164163|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AJ748652|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC094639|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049296|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC028317|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
mm9_v1_chr6_-_93628981_93629110	0.0413293	HOX{A4,D4}.p2	AF027505|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK081387|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr6_+_86354212_86354404	0.0411127	HOX{A4,D4}.p2	NM_001164078|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_001164079|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_011585|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK144222|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK088486|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC023813|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC046812|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC027826|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	U55862|Tia1|21841|cytotoxic granule-associated RNA binding protein 1
mm9_v1_chr11_-_50108981_50109027	0.0410795	HOX{A4,D4}.p2	AK004422|Canx|12330|calnexin
mm9_v1_chr6_+_143156520_143156614	0.0410179	HOX{A4,D4}.p2	AK004338|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr13_-_93300744_93300828	0.0409018	HOX{A4,D4}.p2	AK122241|Zfyve16|218441|zinc finger, FYVE domain containing 16	BC042669|Zfyve16|218441|zinc finger, FYVE domain containing 16	NM_173392|Zfyve16|218441|zinc finger, FYVE domain containing 16	AK170435|Zfyve16|218441|zinc finger, FYVE domain containing 16	AK045090|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr19_-_23211044_23211093	0.0407756	HOX{A4,D4}.p2	AK145685|2410080I02Rik|68248|RIKEN cDNA 2410080I02 gene
mm9_v1_chr18_+_50355539_50355658	0.04076	HOX{A4,D4}.p2	
mm9_v1_chr3_+_9403021_9403077	0.0404961	HOX{A4,D4}.p2	AK039918|C030034L19Rik|320088|RIKEN cDNA C030034L19 gene	AK053975|C030034L19Rik|320088|RIKEN cDNA C030034L19 gene	AK081263|C030034L19Rik|320088|RIKEN cDNA C030034L19 gene	AK030949|C030034L19Rik|320088|RIKEN cDNA C030034L19 gene
mm9_v1_chr18_-_72367655_72367683	0.0403801	HOX{A4,D4}.p2	
mm9_v1_chr10_-_116652417_116652563	0.0392401	HOX{A4,D4}.p2	AK188062|Yeats4|64050|YEATS domain containing 4
mm9_v1_chr5_-_138362822_138362852	0.0386257	HOX{A4,D4}.p2	X63023|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	BC046592|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136494|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136529|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK149572|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	NM_007819|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13
mm9_v1_chr1_+_34364633_34364780	0.03811	HOX{A4,D4}.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr9_-_55983967_55984081	0.0379636	HOX{A4,D4}.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr8_+_32239179_32239274	0.0379236	HOX{A4,D4}.p2	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chr5_-_139606339_139606437	0.037067	HOX{A4,D4}.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr11_+_61818881_61818910	0.0368583	HOX{A4,D4}.p2	
mm9_v1_chr6_+_87040212_87040221	0.0367428	HOX{A4,D4}.p2	AK013141|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr5_+_136259172_136259218	0.0366219	HOX{A4,D4}.p2	DQ402950|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)
mm9_v1_chr18_+_35776026_35776084	0.036528	HOX{A4,D4}.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr16_+_10545479_10545491	0.0362887	HOX{A4,D4}.p2	AK122255|Clec16a|74374|C-type lectin domain family 16, member A	NM_177562|Clec16a|74374|C-type lectin domain family 16, member A	AK155314|Clec16a|74374|C-type lectin domain family 16, member A
mm9_v1_chr2_+_163842411_163842512	0.0359951	HOX{A4,D4}.p2	AK199528|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr3_+_108060061_108060131	0.0356685	HOX{A4,D4}.p2	AK160741|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160530|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160550|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK161680|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC007181|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC010709|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC083342|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC108368|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AF019661|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5
mm9_v1_chr6_+_90424727_90424917	0.0350983	HOX{A4,D4}.p2	AK185404|Klf15|66277|Kruppel-like factor 15	AK211444|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr5_-_30447968_30448066	0.0345584	HOX{A4,D4}.p2	
mm9_v1_chrX_-_156560678_156560850	0.0344373	HOX{A4,D4}.p2	AL355693|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr8_-_36028698_36028768	0.0343117	HOX{A4,D4}.p2	BC057370|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	AK080913|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	NM_175091|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm9_v1_chr6_+_115189004_115189072	0.0338163	HOX{A4,D4}.p2	AK029181|Syn2|20965|synapsin II
mm9_v1_chr2_-_75776467_75776587	0.0337647	HOX{A4,D4}.p2	AK147134|Ttc30b|72421|tetratricopeptide repeat domain 30B	AK011097|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151060|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151184|Ttc30b|72421|tetratricopeptide repeat domain 30B	NM_028235|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC157929|Ttc30b|72421|tetratricopeptide repeat domain 30B
mm9_v1_chr16_+_45094214_45094287	0.0336421	HOX{A4,D4}.p2	AB075019|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr11_+_96164905_96165020	0.0328568	HOX{A4,D4}.p2	BC103595|Hoxb5|15413|homeobox B5	BC103596|Hoxb5|15413|homeobox B5	BC103604|Hoxb5|15413|homeobox B5	BC103607|Hoxb5|15413|homeobox B5	AK133512|Hoxb5|15413|homeobox B5	AK012146|Hoxb5|15413|homeobox B5
mm9_v1_chr10_-_36855668_36856157	0.0323993	HOX{A4,D4}.p2	AK151646|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK153217|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr1_+_44040367_44040379	0.0323689	HOX{A4,D4}.p2	AK214518|Tpp2|22019|tripeptidyl peptidase II
mm9_v1_chr16_-_35313780_35313815	0.0320566	HOX{A4,D4}.p2	AK085223|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK164647|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
mm9_v1_chr15_+_82000246_82000509	0.0319269	HOX{A4,D4}.p2	BC023333|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr5_-_92378648_92378678	0.0318992	HOX{A4,D4}.p2	AK007543|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr2_+_155213904_155214229	0.0314861	HOX{A4,D4}.p2	AK194878|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK201306|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212674|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK213253|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK188182|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK191290|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK194673|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK204807|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK200413|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212877|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr3_+_32468408_32468474	0.0313989	HOX{A4,D4}.p2	BC002133|Mfn1|67414|mitofusin 1	AK009490|Mfn1|67414|mitofusin 1
mm9_v1_chrM_-_14069_14070	0.0313398	HOX{A4,D4}.p2	AK138272|ND6|17722|NADH dehydrogenase subunit 6	AK140300|ND6|17722|NADH dehydrogenase subunit 6
mm9_v1_chr19_+_48012171_48012212	0.0310029	HOX{A4,D4}.p2	BC057135|Ccdc147|381229|coiled-coil domain containing 147	NM_001163267|Ccdc147|381229|coiled-coil domain containing 147	BC147530|Ccdc147|381229|coiled-coil domain containing 147	BC147540|Ccdc147|381229|coiled-coil domain containing 147	BC150978|Ccdc147|381229|coiled-coil domain containing 147	BC150979|Ccdc147|381229|coiled-coil domain containing 147
mm9_v1_chr3_-_135271220_135271233	0.0309636	HOX{A4,D4}.p2	L28117|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr7_+_110368156_110368233	0.0308747	HOX{A4,D4}.p2	BC141016|Olfr594|258246|olfactory receptor 594	NM_207143|Olfr594|258246|olfactory receptor 594
mm9_v1_chr18_+_20832323_20832362	0.0307326	HOX{A4,D4}.p2	AK080757|Ttr|22139|transthyretin
mm9_v1_chr13_-_55671276_55671335	0.0305707	HOX{A4,D4}.p2	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr9_+_92170439_92170579	0.030401	HOX{A4,D4}.p2	NM_001195084|Plscr2|18828|phospholipid scramblase 2	NM_008880|Plscr2|18828|phospholipid scramblase 2	AK002410|Plscr2|18828|phospholipid scramblase 2	BC011299|Plscr2|18828|phospholipid scramblase 2	BC002012|Plscr2|18828|phospholipid scramblase 2
mm9_v1_chr19_-_11679242_11679284	0.0301703	HOX{A4,D4}.p2	BC029738|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D	AF237911|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D	AY039037|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D	AK156878|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D	AK152859|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D	AK004295|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D
mm9_v1_chr8_+_98057984_98058038	0.0295989	HOX{A4,D4}.p2	AK077130|Ccdc113|244608|coiled-coil domain containing 113	NM_172914|Ccdc113|244608|coiled-coil domain containing 113	BC060957|Ccdc113|244608|coiled-coil domain containing 113	BC048506|Ccdc113|244608|coiled-coil domain containing 113
mm9_v1_chr12_-_79944026_79944112	0.0294251	HOX{A4,D4}.p2	
mm9_v1_chr7_-_31204764_31204889	0.0293918	HOX{A4,D4}.p2	AF072846|Hcst|23900|hematopoietic cell signal transducer	AF122905|Hcst|23900|hematopoietic cell signal transducer	BC069220|Hcst|23900|hematopoietic cell signal transducer	BC145545|Hcst|23900|hematopoietic cell signal transducer	BC145824|Hcst|23900|hematopoietic cell signal transducer	BC145826|Hcst|23900|hematopoietic cell signal transducer	AK008005|Hcst|23900|hematopoietic cell signal transducer	AF172930|Hcst|23900|hematopoietic cell signal transducer	NM_011827|Hcst|23900|hematopoietic cell signal transducer
mm9_v1_chr1_+_82721477_82721553	0.0293695	HOX{A4,D4}.p2	BC059229|Mff|75734|mitochondrial fission factor	NM_029409|Mff|75734|mitochondrial fission factor	AK017226|Mff|75734|mitochondrial fission factor	AK083056|Mff|75734|mitochondrial fission factor	AK139649|Mff|75734|mitochondrial fission factor
mm9_v1_chr17_-_45730551_45730602	0.0292827	HOX{A4,D4}.p2	BC004828|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr11_+_46268432_46268486	0.0291052	HOX{A4,D4}.p2	AK148474|Havcr2|171285|hepatitis A virus cellular receptor 2	NM_134250|Havcr2|171285|hepatitis A virus cellular receptor 2	AF450241|Havcr2|171285|hepatitis A virus cellular receptor 2	AY553334|Havcr2|171285|hepatitis A virus cellular receptor 2	AK170775|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106851|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106852|Havcr2|171285|hepatitis A virus cellular receptor 2	AF399831|Havcr2|171285|hepatitis A virus cellular receptor 2
mm9_v1_chr4_-_63156099_63156155	0.0287979	HOX{A4,D4}.p2	AK122523|Whrn|73750|whirlin
mm9_v1_chr3_+_68673489_68673528	0.0282812	HOX{A4,D4}.p2	NM_001167996|1110032F04Rik|68725|RIKEN cDNA 1110032F04 gene
mm9_v1_chr19_-_4012698_4012725	0.0282752	HOX{A4,D4}.p2	AK075692|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK005021|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	BC014818|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	NM_133666|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm9_v1_chr16_+_34921598_34921714	0.0282691	HOX{A4,D4}.p2	AY237727|Mylk|107589|myosin, light polypeptide kinase	BC045197|Mylk|107589|myosin, light polypeptide kinase	AK078556|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr17_-_45705824_45706064	0.0280715	HOX{A4,D4}.p2	S46109|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr10_-_31410391_31410392	0.0280605	HOX{A4,D4}.p2	AK018248|Nkain2|432450|Na+/K+ transporting ATPase interacting 2
mm9_v1_chr5_-_138224418_138224529	0.0277613	HOX{A4,D4}.p2	
mm9_v1_chr9_+_56266618_56266679	0.0274912	HOX{A4,D4}.p2	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr14_-_94287950_94288026	0.0273303	HOX{A4,D4}.p2	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr19_+_12770289_12770302	0.0272074	HOX{A4,D4}.p2	BC010803|Keg1|64697|kidney expressed gene 1	AK165462|Keg1|64697|kidney expressed gene 1	AB028071|Keg1|64697|kidney expressed gene 1
mm9_v1_chr4_-_3761538_3761694	0.0271257	HOX{A4,D4}.p2	AK150667|Rps20|67427|ribosomal protein S20
mm9_v1_chr19_+_5492584_5492667	0.0269667	HOX{A4,D4}.p2	
mm9_v1_chr2_+_125083140_125083255	0.0267289	HOX{A4,D4}.p2	AK166116|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr13_+_52692221_52692252	0.0263587	HOX{A4,D4}.p2	AK143564|Sykb|20963|spleen tyrosine kinase	NM_011518|Sykb|20963|spleen tyrosine kinase	U36776|Sykb|20963|spleen tyrosine kinase	AK136363|Sykb|20963|spleen tyrosine kinase
mm9_v1_chr8_+_114061310_114061413	0.0262422	HOX{A4,D4}.p2	AK078819|Znrf1|170737|zinc and ring finger 1	AK076756|Znrf1|170737|zinc and ring finger 1	AK216619|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr14_+_120674976_120674983	0.0262278	HOX{A4,D4}.p2	AK178232|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr12_+_90191833_90191842	0.0257221	HOX{A4,D4}.p2	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chr8_-_67071497_67071512	0.0256034	HOX{A4,D4}.p2	
mm9_v1_chr13_+_75844906_75844941	0.0255991	HOX{A4,D4}.p2	NM_138953|Ell2|192657|elongation factor RNA polymerase II 2
mm9_v1_chr15_+_91958558_91958558	0.0255225	HOX{A4,D4}.p2	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr10_+_59764681_59764775	0.0254184	HOX{A4,D4}.p2	AK177739|Psap|19156|prosaposin	AK184913|Psap|19156|prosaposin	AK186657|Psap|19156|prosaposin	AK200316|Psap|19156|prosaposin	AK200829|Psap|19156|prosaposin	AK206879|Psap|19156|prosaposin	AK209964|Psap|19156|prosaposin	AK212335|Psap|19156|prosaposin	AK218028|Psap|19156|prosaposin	AK193227|Psap|19156|prosaposin	AK194685|Psap|19156|prosaposin
mm9_v1_chr17_+_25923512_25923524	0.0252341	HOX{A4,D4}.p2	AK140238|Ccdc78|381077|coiled-coil domain containing 78	NM_001165929|Ccdc78|381077|coiled-coil domain containing 78
mm9_v1_chrM_-_622_663	0.02498	HOX{A4,D4}.p2	
mm9_v1_chr11_-_43496158_43496178	0.0239371	HOX{A4,D4}.p2	
mm9_v1_chr4_+_134481298_134481299	0.0239262	HOX{A4,D4}.p2	
mm9_v1_chr3_-_135988955_135989029	0.0239006	HOX{A4,D4}.p2	BC026932|Bank1|242248|B-cell scaffold protein with ankyrin repeats 1	AK041242|Bank1|242248|B-cell scaffold protein with ankyrin repeats 1	BC116328|Bank1|242248|B-cell scaffold protein with ankyrin repeats 1	EU051378|Bank1|242248|B-cell scaffold protein with ankyrin repeats 1	NM_001033350|Bank1|242248|B-cell scaffold protein with ankyrin repeats 1	AK156201|Bank1|242248|B-cell scaffold protein with ankyrin repeats 1	AY178734|Bank1|242248|B-cell scaffold protein with ankyrin repeats 1
mm9_v1_chr4_-_35792385_35792444	0.0238619	HOX{A4,D4}.p2	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chrX_-_20666354_20666354	0.0238618	HOX{A4,D4}.p2	AK053018|Zfp300|245368|zinc finger protein 300	NM_183185|Zfp300|245368|zinc finger protein 300
mm9_v1_chr5_+_120120870_120121055	0.0237868	HOX{A4,D4}.p2	BC096551|Tbx3|21386|T-box 3	AK052453|Tbx3|21386|T-box 3
mm9_v1_chr12_+_114312268_114312351	0.0237051	HOX{A4,D4}.p2	AK216671|Pacs2|217893|phosphofurin acidic cluster sorting protein 2
mm9_v1_chr8_-_3625510_3625544	0.0233773	HOX{A4,D4}.p2	BC014694|Pcp2|18545|Purkinje cell protein 2 (L7)	BC028982|Pcp2|18545|Purkinje cell protein 2 (L7)	BC024853|Pcp2|18545|Purkinje cell protein 2 (L7)	EU164759|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129803|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr11_-_100355280_100355392	0.0232224	HOX{A4,D4}.p2	AK136812|Acly|104112|ATP citrate lyase	AK043434|Acly|104112|ATP citrate lyase
mm9_v1_chr7_-_151622848_151622956	0.0231982	HOX{A4,D4}.p2	AK184845|Cttn|13043|cortactin
mm9_v1_chr6_-_122692754_122692762	0.0231016	HOX{A4,D4}.p2	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr9_+_114632997_114633011	0.0230985	HOX{A4,D4}.p2	
mm9_v1_chr10_+_98725871_98725972	0.0229733	HOX{A4,D4}.p2	AK009131|Dusp6|67603|dual specificity phosphatase 6	AK159146|Dusp6|67603|dual specificity phosphatase 6	AK159900|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr8_+_72315061_72315156	0.0226826	HOX{A4,D4}.p2	BC138721|Atp13a1|170759|ATPase type 13A1	BC138722|Atp13a1|170759|ATPase type 13A1	NM_133224|Atp13a1|170759|ATPase type 13A1	AB035381|Atp13a1|170759|ATPase type 13A1	AK052057|Atp13a1|170759|ATPase type 13A1	BC078635|Atp13a1|170759|ATPase type 13A1
mm9_v1_chr4_+_123613778_123613862	0.0222958	HOX{A4,D4}.p2	AK003876|Rragc|54170|Ras-related GTP binding C	AK196968|Rragc|54170|Ras-related GTP binding C	AK177349|Rragc|54170|Ras-related GTP binding C	AK196201|Rragc|54170|Ras-related GTP binding C	AK204008|Rragc|54170|Ras-related GTP binding C	AK213206|Rragc|54170|Ras-related GTP binding C
mm9_v1_chr14_+_120724380_120724561	0.0221787	HOX{A4,D4}.p2	BC020406|Mbnl2|105559|muscleblind-like 2	BC026711|Mbnl2|105559|muscleblind-like 2	GQ906534|Mbnl2|105559|muscleblind-like 2	AK216404|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr17_-_57387033_57387124	0.0219583	HOX{A4,D4}.p2	AK047364|Gpr108|78308|G protein-coupled receptor 108	AF376726|Gpr108|78308|G protein-coupled receptor 108	AX775897|Gpr108|78308|G protein-coupled receptor 108	AK082797|Gpr108|78308|G protein-coupled receptor 108	BC016104|Gpr108|78308|G protein-coupled receptor 108	NM_030084|Gpr108|78308|G protein-coupled receptor 108	AK159313|Gpr108|78308|G protein-coupled receptor 108	AK170948|Gpr108|78308|G protein-coupled receptor 108	AK171030|Gpr108|78308|G protein-coupled receptor 108	AX775895|Gpr108|78308|G protein-coupled receptor 108
mm9_v1_chr8_+_71317827_71317912	0.0218572	HOX{A4,D4}.p2	AK040574|Ints10|70885|integrator complex subunit 10	AK047093|Ints10|70885|integrator complex subunit 10	AK014939|Ints10|70885|integrator complex subunit 10	NM_027590|Ints10|70885|integrator complex subunit 10	AK147743|Ints10|70885|integrator complex subunit 10	AK169819|Ints10|70885|integrator complex subunit 10	AK030974|Ints10|70885|integrator complex subunit 10	BC031923|Ints10|70885|integrator complex subunit 10	AK083331|Ints10|70885|integrator complex subunit 10	AK034498|Ints10|70885|integrator complex subunit 10
mm9_v1_chr18_+_32416881_32416904	0.0217604	HOX{A4,D4}.p2	BC024446|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3
mm9_v1_chr6_-_83003346_83003410	0.0216848	HOX{A4,D4}.p2	AK176936|Htra2|64704|HtrA serine peptidase 2	AK178298|Htra2|64704|HtrA serine peptidase 2	AK182973|Htra2|64704|HtrA serine peptidase 2	AK186135|Htra2|64704|HtrA serine peptidase 2	AK188221|Htra2|64704|HtrA serine peptidase 2	AK215600|Htra2|64704|HtrA serine peptidase 2
mm9_v1_chr7_-_125832234_125832286	0.0209399	HOX{A4,D4}.p2	
mm9_v1_chr3_-_145770980_145771093	0.0202945	HOX{A4,D4}.p2	AK029903|Wdr63|242253|WD repeat domain 63	NM_172864|Wdr63|242253|WD repeat domain 63	BC158119|Wdr63|242253|WD repeat domain 63
mm9_v1_chr6_+_66986637_66986648	0.0188125	HOX{A4,D4}.p2	AK054076|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr13_+_106233718_106234065	0.018707	HOX{A4,D4}.p2	AK140194|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	NM_008308|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049884|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049814|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138669|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138681|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A
mm9_v1_chr14_+_119379988_119380035	0.0184241	HOX{A4,D4}.p2	AK200390|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3
mm9_v1_chr9_-_89633312_89633312	0.017895	HOX{A4,D4}.p2	AK045652|Ankrd34c|330998|ankyrin repeat domain 34C	NM_207260|Ankrd34c|330998|ankyrin repeat domain 34C
mm9_v1_chr11_+_98667577_98667599	0.0178904	HOX{A4,D4}.p2	AK031902|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr11_+_98671106_98671158	0.0173202	HOX{A4,D4}.p2	NM_138660|Casc3|192160|cancer susceptibility candidate 3	AF526276|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr6_+_134780207_134780442	0.0170742	HOX{A4,D4}.p2	AK045467|Crebl2|232430|cAMP responsive element binding protein-like 2	NM_177687|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109358|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109359|Crebl2|232430|cAMP responsive element binding protein-like 2	AK195782|Crebl2|232430|cAMP responsive element binding protein-like 2
mm9_v1_chrX_-_133275812_133275890	0.0170718	HOX{A4,D4}.p2	AK089963|Morf4l2|56397|mortality factor 4 like 2	AK153146|Morf4l2|56397|mortality factor 4 like 2	AK075946|Morf4l2|56397|mortality factor 4 like 2	AK131944|Morf4l2|56397|mortality factor 4 like 2	AK145686|Morf4l2|56397|mortality factor 4 like 2	AK150401|Morf4l2|56397|mortality factor 4 like 2	AK150670|Morf4l2|56397|mortality factor 4 like 2	AK151570|Morf4l2|56397|mortality factor 4 like 2	AK159179|Morf4l2|56397|mortality factor 4 like 2	AK160012|Morf4l2|56397|mortality factor 4 like 2	AK164433|Morf4l2|56397|mortality factor 4 like 2	AK165985|Morf4l2|56397|mortality factor 4 like 2	AK159145|Morf4l2|56397|mortality factor 4 like 2	NM_001168226|Morf4l2|56397|mortality factor 4 like 2	NM_001168229|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr11_+_98671008_98671098	0.0164953	HOX{A4,D4}.p2	BC141296|Casc3|192160|cancer susceptibility candidate 3	AK139608|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr1_+_174437040_174437140	0.0164685	HOX{A4,D4}.p2	AK019231|Tagln2|21346|transgelin 2
mm9_v1_chr10_-_60895433_60895442	0.0162969	HOX{A4,D4}.p2	AK216330|Eif4ebp2|13688|eukaryotic translation initiation factor 4E binding protein 2
mm9_v1_chr6_-_54767627_54767644	0.0162302	HOX{A4,D4}.p2	AK011926|2610209C05Rik|70449|RIKEN cDNA 2610209C05 gene
mm9_v1_chr14_+_28051224_28051247	0.0157835	HOX{A4,D4}.p2	AK004600|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	NM_027871|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036737|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036749|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr19_-_46454182_46454202	0.015766	HOX{A4,D4}.p2	AK183380|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK181671|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK194654|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr17_-_35258136_35258391	0.0156022	HOX{A4,D4}.p2	AK012369|Csnk2b|13001|casein kinase 2, beta polypeptide	X56502|Csnk2b|13001|casein kinase 2, beta polypeptide	AK010730|Csnk2b|13001|casein kinase 2, beta polypeptide	AK002903|Csnk2b|13001|casein kinase 2, beta polypeptide	X52959|Csnk2b|13001|casein kinase 2, beta polypeptide	AK146186|Csnk2b|13001|casein kinase 2, beta polypeptide	BC003775|Csnk2b|13001|casein kinase 2, beta polypeptide	AK161330|Csnk2b|13001|casein kinase 2, beta polypeptide	NM_009975|Csnk2b|13001|casein kinase 2, beta polypeptide
mm9_v1_chr17_+_34727032_34727160	0.0154519	HOX{A4,D4}.p2	AK155863|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC021942|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)
mm9_v1_chr19_+_12770279_12770282	0.0153686	HOX{A4,D4}.p2	NM_029550|Keg1|64697|kidney expressed gene 1	AK002360|Keg1|64697|kidney expressed gene 1	AK165349|Keg1|64697|kidney expressed gene 1	AK165515|Keg1|64697|kidney expressed gene 1
mm9_v1_chr13_-_21545556_21545633	0.0149814	HOX{A4,D4}.p2	AK156196|Zfp187|432731|zinc finger protein 187	NM_001013786|Zfp187|432731|zinc finger protein 187
mm9_v1_chr5_-_109012019_109012139	0.0146188	HOX{A4,D4}.p2	BC003958|Gak|231580|cyclin G associated kinase
mm9_v1_chr16_-_31314534_31314685	0.0144803	HOX{A4,D4}.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chr16_-_84955488_84955582	0.0142039	HOX{A4,D4}.p2	AK190067|App|11820|amyloid beta (A4) precursor protein	AK194558|App|11820|amyloid beta (A4) precursor protein	AK213784|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr8_+_108703203_108703313	0.0141686	HOX{A4,D4}.p2	
mm9_v1_chr9_-_44495469_44495477	0.0141274	HOX{A4,D4}.p2	BC025451|Phldb1|102693|pleckstrin homology-like domain, family B, member 1
mm9_v1_chr10_-_68004607_68004622	0.0140876	HOX{A4,D4}.p2	BC087900|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene	AK006661|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene	AK029622|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene	NM_028491|1700040L02Rik|73287|RIKEN cDNA 1700040L02 gene
mm9_v1_chr19_-_44471675_44471892	0.0135926	HOX{A4,D4}.p2	AK012370|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr6_-_52176102_52176188	0.0135398	HOX{A4,D4}.p2	AB221551|Hoxa9|15405|homeobox A9	BC055059|Hoxa9|15405|homeobox A9
mm9_v1_chr2_-_60591836_60591898	0.0134537	HOX{A4,D4}.p2	AK159851|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr3_-_58689068_58689133	0.0133335	HOX{A4,D4}.p2	AK041623|Clrn1|229320|clarin 1	AK042523|Clrn1|229320|clarin 1	BC132254|Clrn1|229320|clarin 1	BC132256|Clrn1|229320|clarin 1	BC145202|Clrn1|229320|clarin 1	AF495718|Clrn1|229320|clarin 1	AF495719|Clrn1|229320|clarin 1	AF495720|Clrn1|229320|clarin 1	NM_153384|Clrn1|229320|clarin 1	NM_153385|Clrn1|229320|clarin 1	NM_153386|Clrn1|229320|clarin 1
mm9_v1_chr12_-_81861527_81861701	0.0130171	HOX{A4,D4}.p2	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr17_+_35404109_35404141	0.0130063	HOX{A4,D4}.p2	
mm9_v1_chr16_+_44811858_44811936	0.0125812	HOX{A4,D4}.p2	AK089262|Cd200r4|239849|CD200 receptor 4
mm9_v1_chrX_+_63902456_63902492	0.0123343	HOX{A4,D4}.p2	NM_001161431|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr5_-_122020680_122020739	0.0118928	HOX{A4,D4}.p2	AK184586|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK189526|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK188389|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial
mm9_v1_chr8_+_73282270_73282383	0.0118212	HOX{A4,D4}.p2	
mm9_v1_chr8_+_131248283_131248313	0.0117932	HOX{A4,D4}.p2	AK085828|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)	U37029|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr6_+_145756902_145756931	0.011713	HOX{A4,D4}.p2	AF424737|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	NM_027760|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	BC115779|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	BC117546|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
mm9_v1_chr2_-_154429414_154429464	0.011662	HOX{A4,D4}.p2	AK003127|Pxmp4|59038|peroxisomal membrane protein 4	AK019381|Pxmp4|59038|peroxisomal membrane protein 4	AK013793|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr3_-_90017553_90017574	0.0116509	HOX{A4,D4}.p2	BC048352|Rps27|57294|ribosomal protein S27	BC027649|Rps27|57294|ribosomal protein S27	BC055693|Rps27|57294|ribosomal protein S27	BC037026|Rps27|57294|ribosomal protein S27	AK014294|Rps27|57294|ribosomal protein S27	AK084058|Rps27|57294|ribosomal protein S27	NM_001190258|Gm9846|100043813|predicted gene 9846	AK088320|Rps27|57294|ribosomal protein S27	AK166551|Rps27|57294|ribosomal protein S27	NM_027015|Rps27|57294|ribosomal protein S27
mm9_v1_chr10_+_38685309_38685399	0.0113892	HOX{A4,D4}.p2	AK053234|Lama4|16775|laminin, alpha 4	NM_010681|Lama4|16775|laminin, alpha 4	AK031189|Lama4|16775|laminin, alpha 4	AK087015|Lama4|16775|laminin, alpha 4	AK164903|Lama4|16775|laminin, alpha 4	U69176|Lama4|16775|laminin, alpha 4
mm9_v1_chr18_+_37480034_37480222	0.0110577	HOX{A4,D4}.p2	AK028661|Pcdhb5|93876|protocadherin beta 5	NM_053130|Pcdhb5|93876|protocadherin beta 5	AK049825|Pcdhb5|93876|protocadherin beta 5	BC141147|Pcdhb5|93876|protocadherin beta 5	AY013787|Pcdhb5|93876|protocadherin beta 5
mm9_v1_chr9_-_54509658_54509691	0.0107333	HOX{A4,D4}.p2	AB050554|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	NM_053178|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr8_-_35153699_35153753	0.0107052	HOX{A4,D4}.p2	
mm9_v1_chr4_-_148473897_148473960	0.0103428	HOX{A4,D4}.p2	BC028952|Pex14|56273|peroxisomal biogenesis factor 14	AF097512|Pex14|56273|peroxisomal biogenesis factor 14	NM_019781|Pex14|56273|peroxisomal biogenesis factor 14	AK148779|Pex14|56273|peroxisomal biogenesis factor 14
mm9_v1_chr17_+_47278689_47278726	0.0102959	HOX{A4,D4}.p2	AK170333|Trerf1|224829|transcriptional regulating factor 1
mm9_v1_chr10_+_55826722_55826737	0.00996027	HOX{A4,D4}.p2	BC037487|Msl3l2|73390|male-specific lethal 3-like 2 (Drosophila)	NM_001163833|Msl3l2|73390|male-specific lethal 3-like 2 (Drosophila)	AK155382|Msl3l2|73390|male-specific lethal 3-like 2 (Drosophila)
mm9_v1_chrX_+_7339942_7339952	0.00984689	HOX{A4,D4}.p2	AF510653|Tcfe3|209446|transcription factor E3
mm9_v1_chr9_-_57531425_57531441	0.0098384	HOX{A4,D4}.p2	X04283|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	BC018298|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr13_-_77230519_77230547	0.00981933	HOX{A4,D4}.p2	BC083095|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr19_-_6982094_6982140	0.00937704	HOX{A4,D4}.p2	BC014682|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr19_-_32182638_32182709	0.00932871	HOX{A4,D4}.p2	AB037111|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK080951|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK041937|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK047692|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK046540|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK166100|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK034493|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr17_+_72119030_72119041	0.00900727	HOX{A4,D4}.p2	AK029962|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	NM_175378|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK018895|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK075758|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK161301|Clip4|78785|CAP-GLY domain containing linker protein family, member 4
mm9_v1_chr1_-_4483533_4483815	0.00898659	HOX{A4,D4}.p2	BC060612|Sox17|20671|SRY-box containing gene 17	BC037521|Sox17|20671|SRY-box containing gene 17	BC027687|Sox17|20671|SRY-box containing gene 17
mm9_v1_chr1_+_145586478_145586478	0.00848148	HOX{A4,D4}.p2	AK005853|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038593|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr14_-_56332217_56332328	0.00841857	HOX{A4,D4}.p2	AF186373|Tgm1|21816|transglutaminase 1, K polypeptide	NM_001161714|Tgm1|21816|transglutaminase 1, K polypeptide	NM_001161715|Tgm1|21816|transglutaminase 1, K polypeptide
mm9_v1_chr1_-_159342351_159342384	0.00835651	HOX{A4,D4}.p2	AK086812|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr17_+_56301980_56301995	0.0082336	HOX{A4,D4}.p2	AK004949|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	BC032199|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1
mm9_v1_chr13_+_24904944_24904959	0.00808739	HOX{A4,D4}.p2	AK088171|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr1_+_185858324_185858355	0.0080102	HOX{A4,D4}.p2	BC025066|Dusp10|63953|dual specificity phosphatase 10	AB037908|Dusp10|63953|dual specificity phosphatase 10	AK142568|Dusp10|63953|dual specificity phosphatase 10	AK088186|Dusp10|63953|dual specificity phosphatase 10	NM_022019|Dusp10|63953|dual specificity phosphatase 10	AK035293|Dusp10|63953|dual specificity phosphatase 10	AK050528|Dusp10|63953|dual specificity phosphatase 10	AK088357|Dusp10|63953|dual specificity phosphatase 10	AK088024|Dusp10|63953|dual specificity phosphatase 10	AK011995|Dusp10|63953|dual specificity phosphatase 10
mm9_v1_chr1_+_40381420_40381534	0.0079172	HOX{A4,D4}.p2	AK054530|Il1rl2|107527|interleukin 1 receptor-like 2	NM_133193|Il1rl2|107527|interleukin 1 receptor-like 2	AF284433|Il1rl2|107527|interleukin 1 receptor-like 2	BC117797|Il1rl2|107527|interleukin 1 receptor-like 2	AK085780|Il1rl2|107527|interleukin 1 receptor-like 2
mm9_v1_chr8_+_131028275_131028322	0.0077513	HOX{A4,D4}.p2	AK002673|Nrp1|18186|neuropilin 1
mm9_v1_chr13_+_14722520_14722529	0.00724339	HOX{A4,D4}.p2	AK167401|AW209491|105351|expressed sequence AW209491	NM_134067|AW209491|105351|expressed sequence AW209491
mm9_v1_chr6_-_52154325_52154433	0.00705956	HOX{A4,D4}.p2	AK144356|Hoxa5|15402|homeobox A5	AB221550|Hoxa5|15402|homeobox A5	BC011063|Hoxa5|15402|homeobox A5
mm9_v1_chr11_-_48927255_48927258	0.00697884	HOX{A4,D4}.p2	BC110470|Olfr1396|258334|olfactory receptor 1396	BC110471|Olfr1396|258334|olfactory receptor 1396	NM_146337|Olfr1396|258334|olfactory receptor 1396
mm9_v1_chr17_-_85463965_85464074	0.00693219	HOX{A4,D4}.p2	
mm9_v1_chr3_-_142456600_142456910	0.00665993	HOX{A4,D4}.p2	AK140746|Pkn2|109333|protein kinase N2	AK084887|Pkn2|109333|protein kinase N2	AK082921|Pkn2|109333|protein kinase N2
mm9_v1_chr5_-_101001209_101001243	0.00638925	HOX{A4,D4}.p2	AF263458|Plac8|231507|placenta-specific 8	AK007369|Plac8|231507|placenta-specific 8	NM_139198|Plac8|231507|placenta-specific 8	AJ422151|Plac8|231507|placenta-specific 8
mm9_v1_chr11_+_82577835_82577869	0.00555446	HOX{A4,D4}.p2	AK008475|Zfp830|66983|zinc finger protein 830	AK132497|Zfp830|66983|zinc finger protein 830	NM_025884|Zfp830|66983|zinc finger protein 830	AK148058|Zfp830|66983|zinc finger protein 830	AK050043|Zfp830|66983|zinc finger protein 830	AK010353|Zfp830|66983|zinc finger protein 830	AK167656|Zfp830|66983|zinc finger protein 830	BC024340|Zfp830|66983|zinc finger protein 830	AK168417|Zfp830|66983|zinc finger protein 830	AK017640|Zfp830|66983|zinc finger protein 830
mm9_v1_chr2_+_162758440_162758589	0.00539038	HOX{A4,D4}.p2	AK051608|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr4_-_63156984_63157036	0.00536518	HOX{A4,D4}.p2	AY739114|Whrn|73750|whirlin	AY739115|Whrn|73750|whirlin	AY739116|Whrn|73750|whirlin	AY739117|Whrn|73750|whirlin	AY739118|Whrn|73750|whirlin	AY739119|Whrn|73750|whirlin	AY739120|Whrn|73750|whirlin	NM_001008791|Whrn|73750|whirlin	NM_001008792|Whrn|73750|whirlin	NM_001008793|Whrn|73750|whirlin	NM_001008794|Whrn|73750|whirlin	NM_001008795|Whrn|73750|whirlin	NM_001008796|Whrn|73750|whirlin	NM_028640|Whrn|73750|whirlin	AK157955|Whrn|73750|whirlin
mm9_v1_chr14_+_66915852_66915861	0.00533923	HOX{A4,D4}.p2	NM_029979|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr6_+_66986592_66986609	0.00517489	HOX{A4,D4}.p2	AK029473|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr12_+_77938392_77938461	0.00514774	HOX{A4,D4}.p2	AK008228|Fntb|110606|farnesyltransferase, CAAX box, beta	AK089911|Fntb|110606|farnesyltransferase, CAAX box, beta	BC031417|Fntb|110606|farnesyltransferase, CAAX box, beta	NM_145927|Fntb|110606|farnesyltransferase, CAAX box, beta
mm9_v1_chr4_-_148500769_148500849	0.00475113	HOX{A4,D4}.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr1_+_59543450_59543567	0.00468093	HOX{A4,D4}.p2	
mm9_v1_chr7_+_128195668_128195858	0.00448242	HOX{A4,D4}.p2	AK188768|Mettl9|59052|methyltransferase like 9	AK202674|Mettl9|59052|methyltransferase like 9	AK208061|Mettl9|59052|methyltransferase like 9	AK209406|Mettl9|59052|methyltransferase like 9	AK210173|Mettl9|59052|methyltransferase like 9	AK217664|Mettl9|59052|methyltransferase like 9	AK219043|Mettl9|59052|methyltransferase like 9	AK206681|Mettl9|59052|methyltransferase like 9	AK216652|Mettl9|59052|methyltransferase like 9
mm9_v1_chr3_+_136539113_136539149	0.00411607	HOX{A4,D4}.p2	AK189167|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK191345|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK211949|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK211995|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK219430|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr9_-_96978102_96978110	0.00407152	HOX{A4,D4}.p2	AK087750|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr18_+_77365613_77365672	0.0040221	HOX{A4,D4}.p2	AK078097|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr7_-_135020290_135020344	0.00393487	HOX{A4,D4}.p2	BC028251|Zfp668|244219|zinc finger protein 668	AK047593|Zfp668|244219|zinc finger protein 668	AK081436|Zfp668|244219|zinc finger protein 668	AK053438|Zfp668|244219|zinc finger protein 668	NM_146259|Zfp668|244219|zinc finger protein 668	AK169556|Zfp668|244219|zinc finger protein 668
mm9_v1_chr5_+_115791215_115791352	0.00368732	HOX{A4,D4}.p2	AK007514|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	NM_026933|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	U61156|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	BC030325|Triap1|69076|TP53 regulated inhibitor of apoptosis 1
mm9_v1_chr3_-_30799013_30799120	0.00350183	HOX{A4,D4}.p2	AK050678|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr4_+_58298833_58298983	0.00337131	HOX{A4,D4}.p2	NM_001037127|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037128|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037129|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037130|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001165996|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_010944|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37708|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37709|Musk|18198|muscle, skeletal, receptor tyrosine kinase	BC100342|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY360453|Musk|18198|muscle, skeletal, receptor tyrosine kinase	X86444|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955296|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955297|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955298|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956403|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956404|Musk|18198|muscle, skeletal, receptor tyrosine kinase
mm9_v1_chr8_+_42416046_42416071	0.00286293	HOX{A4,D4}.p2	AK040482|Pcm1|18536|pericentriolar material 1
mm9_v1_chr7_-_52765714_52765785	0.00265014	HOX{A4,D4}.p2	AK004886|Nucb1|18220|nucleobindin 1	AK007976|Nucb1|18220|nucleobindin 1	AK080831|Nucb1|18220|nucleobindin 1	AK140710|Nucb1|18220|nucleobindin 1	BC072554|Nucb1|18220|nucleobindin 1	AK002630|Nucb1|18220|nucleobindin 1	AK164088|Nucb1|18220|nucleobindin 1	AK160981|Nucb1|18220|nucleobindin 1	AK170717|Nucb1|18220|nucleobindin 1	AK045087|Nucb1|18220|nucleobindin 1	NM_001163662|Nucb1|18220|nucleobindin 1	NM_008749|Nucb1|18220|nucleobindin 1
mm9_v1_chr3_-_107877497_107877529	0.00260989	HOX{A4,D4}.p2	AK192664|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr5_-_22252628_22252724	0.00217445	HOX{A4,D4}.p2	BC030424|A930003O13Rik|330052|RIKEN cDNA A930003O13 gene	AK044256|A930003O13Rik|330052|RIKEN cDNA A930003O13 gene
mm9_v1_chr11_-_83880574_83880586	0.00197764	HOX{A4,D4}.p2	AK009744|Dusp14|56405|dual specificity phosphatase 14
mm9_v1_chr7_+_130267398_130267398	0.00197463	HOX{A4,D4}.p2	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr2_+_131763454_131763725	0.0014648	HOX{A4,D4}.p2	AK215651|Prnp|19122|prion protein	AK205534|Prnp|19122|prion protein	AK213884|Prnp|19122|prion protein	AK206219|Prnp|19122|prion protein
mm9_v1_chr12_+_92639432_92639449	0.00101206	HOX{A4,D4}.p2	NM_001113404|Tshr|22095|thyroid stimulating hormone receptor	NM_011648|Tshr|22095|thyroid stimulating hormone receptor	AK014519|Tshr|22095|thyroid stimulating hormone receptor	AK021020|Tshr|22095|thyroid stimulating hormone receptor	U02601|Tshr|22095|thyroid stimulating hormone receptor	U02602|Tshr|22095|thyroid stimulating hormone receptor
mm9_v1_chr7_+_111054855_111054855	9.53786e-05	HOX{A4,D4}.p2	BC137766|Olfr65|18365|olfactory receptor 65	NM_013616|Olfr65|18365|olfactory receptor 65
